SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11957
Pre Gene Modal
BGIBMGA004382
Annotation
PREDICTED:_gastrula_zinc_finger_protein_XlCGF26.1-like_isoform_X2_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.633
 

Sequence

CDS
ATGGAGTTCAATGATACAACCAAAACAGAGGACACATTAACTTTAAAAAAATATGAAAATTTCACAAAAGACGAAATGATAGAAATAAAACATTTTTCAAATTCAGATCATGAAAGTAATGCAAGAAAAGAAGATTCAGATAAAACACAACAAAAGGATGAGAGATATGATAATCCATTCAGAGAAGAAAAAACTGAAATAAATAATTCTATTATAGAAATGACGGAAAGCAGTGAAAAGCGAGATAGTAAACATGACAGCACGAATAGTTCGTCTAATAGTCGTGAGAACTATTCCCCCATGAAAATAGATTTCATGGCTCTTGAGGAGAATCATGAATATGATACATTCGGTGACAACAACACAGTTTATAGGAAGTATAAGCTTCGCAAGAGAACATCTAAACCAGTTGTTGAATATCAAATAGATGAATTTGAAGAAGTCAAAGATATTAAAAAGAGAATTTCAAATATAGAACCAGAATTGAATACATGTACATTTTGTTCTATGGAATTTTCTAATAAACAAGGATACAACAATCACATGAGAATACATAAAAATAAAAGTTCAACATACAAATGTGCACAGTGTTTCCAAACTTTCACAGAAAACAATGATTTGATAAGTCATAAAGAAATCCATAATGATGAATCATTTTTTATTTGCAATAAATGCCCAGTGGCATTTACAAATAACTGTGACTATCTCATTCACAAGGCAAGTCACAACACAAAAAAGGTTTTTACTTGTGAAGAATGCGAACAGACATATTCAAATAAAACAAGCATCGTAAAACATATTGAAACACACTTTGATAGAAGAACGAAATGTCATCTGTGTTTTAAAATGATAAAAAATTACAATTTACAAAGTCATCTGAGAAATCACGAAACATCTTATGAATGTGTTGAATGTGGTAAATGTCTTGTCAACAAATCAGATTACAATTTGCATATGACCATGCATACTGGCATCAAATTGTTCCAATGCCTTTACTGTGGAAAAGGTTTTGCAAACAATCAGCAAAGGAACAACCATACAAGAGTTCATACAAATGAACGCCCCTATGAATGTAAGATTTGTTTCCAAAAGTTCAAAGACACAATAGGATTGCAGCGCCATAAAGTAACTCATGACACTGTAAAAAGACACCAATGCAATGTTTGTGGGAAAAAATATTTTCATTTACAGCAACTGAGAACGCATTCACGTATTCATAGTGACTTTTCTCGGTACACATGTCAGATGTGTGGAAAACGCTTCCCTAATGCTGCAGGTCTAAAAACTCACATACTGTACATACATAAAAAAGACAGACCTTACAAATGTGAATACTGTAATTACAGTTTTATAATAAAAGGGCAGTTGGTAAGACACTGCAAATCAAAACGGCATAATAATAATGTGTATGGCTTTATGCAAAAGGATAAATAA
Protein
MEFNDTTKTEDTLTLKKYENFTKDEMIEIKHFSNSDHESNARKEDSDKTQQKDERYDNPFREEKTEINNSIIEMTESSEKRDSKHDSTNSSSNSRENYSPMKIDFMALEENHEYDTFGDNNTVYRKYKLRKRTSKPVVEYQIDEFEEVKDIKKRISNIEPELNTCTFCSMEFSNKQGYNNHMRIHKNKSSTYKCAQCFQTFTENNDLISHKEIHNDESFFICNKCPVAFTNNCDYLIHKASHNTKKVFTCEECEQTYSNKTSIVKHIETHFDRRTKCHLCFKMIKNYNLQSHLRNHETSYECVECGKCLVNKSDYNLHMTMHTGIKLFQCLYCGKGFANNQQRNNHTRVHTNERPYECKICFQKFKDTIGLQRHKVTHDTVKRHQCNVCGKKYFHLQQLRTHSRIHSDFSRYTCQMCGKRFPNAAGLKTHILYIHKKDRPYKCEYCNYSFIIKGQLVRHCKSKRHNNNVYGFMQKDK

Summary

Pfam
PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
PF01352   KRAB
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR022755   Znf_C2H2_jaz       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
IPR017114   YY-1-like       
SUPFAM
SSF57667   SSF57667        + More
SSF109640   SSF109640       
PDB
5V3M     E-value=1.10443e-36,     Score=385

Ontologies

Topology

Length:
477
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00463
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01190
outside
1  -  477
 
 

Population Genetic Test Statistics

Pi
155.737865
Theta
150.516246
Tajima's D
0.109056
CLR
0
CSRT
0.402029898505075
Interpretation
Uncertain
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