Gene

KWMTBOMO11930

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr20(-):3749084-3751562      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.975

CDS

ATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTTCACCCCGGGGAAATAAGACGGGTCCTGAATTGCGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAGGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGCCTAGTCGACCTTCCCGCAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGATGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCACCAGCTCTCAAATCGGCCTTCCCCGACTTGTCCACTCGTGGACGAGAGGGGTAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGTTCCAAACAACTCTGTACCCTCAGAGGCCGCATTCCACCAATTGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATCCATGACGCGACTGTTCAATTCCATTCTGTCCACAGGACACTTTCCGGGAACTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAATTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MRVYAAYRPPGPDFHPGEIRRVLNCDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPAIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSYRGYAWEERIDEAREDPSSVSLHRLCHQLSNRPSPTCPLVDERGNRCFSAQARADVLAVMLERQFVPNNSVPSEAAFHQLVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSSMTRLFNSILSTGHFPGTWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGNLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   X1WZH0   A0A1Y1NA23   J9KPF1   + More
J9LC21   J9JS95   J9LFC9   J9LF86   X1WLB2   A0A2J7Q6J2   V5GNJ2   A0A2J7PBY3   A0A2J7QY69   A0A2J7PU96   A0A2J7QR37   A0A224X6Q4   A0A087UCW3   X1XGU0   A0A1Y1KUU7   J9KCZ4   X1WN18   A0A1Y1LKN6   A0A0A9YJ00   A0A023EYS8   A0A224XB44   A0A2J7PDM0   A0A0A9YU04   A0A2S2RAN7   A0A2J7R098   A0A2J7Q9Z1   A0A2J7R4U3   A0A0N1PFV1   A0A2J7QES2   A0A2J7PSM7   A0A2J7PMN4   A0A2J7RQ52   J9LF85   A0A2J7QFL0   J9LR29   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R7D0   A0A2J7RE85   A0A2A4K918   A0A2J7RKP3   A0A2J7R6U1   A0A224XF24   X1WQR0   Q9XXW0   A0A2S2NJB5   A0A023EZE6   A0A2H8TF37   A0A139WA11   V5GNF3   Q9BPQ0   A0A139W8G9   A0A2S2NH02   J9LYS0   A0A2J7PVX3   K7IN67   A0A2S2NGV8   A0A224XIB0   A0A2J7RMG0   A0A2J7PQB5   O96546   J9KKL3   A0A224XHW8   A0A023F069   A0A2S2R9D4   A0A069DZL8   J9JUG3   A0A2J7QB68   A0A2S2P6C4   A0A023F0I3   A0A2M4CV52   A0A2S2PR14   A0A142LX53   A0A2J7R8R8   A0A2S2PUS3   Q93137   P21328   A0A069DX78   A0A2S2QEE0   A0A1Y1K0C8   D7GYA5   A0A224XK92   A0A2M4CV42   A0A1Y1KFR3   A0A2J7PP17   A0A2S2PX53   A0A2S2N814   A0A0A9YSX4   A0A1Q3G5F7  

EC Number

2.7.7.49

Pubmed

28004739    25401762    25474469    26354079    10333566    18362917    + More
19820115    20075255    10380107    26334808    25527032    2463954    3040362    1714378   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    + More
ABLF02008464    ABLF02034467    GEZM01008457    JAV94772.1    ABLF02041767    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02028535    ABLF02028545    ABLF02023911    ABLF02017815    ABLF02042518    ABLF02057746    NEVH01017470    PNF24199.1    GALX01005299    JAB63167.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01021205    PNF19912.1    NEVH01011985    PNF31054.1    GFTR01008279    JAW08147.1    KK119261    KFM75202.1    ABLF02055645    GEZM01074951    JAV64378.1    ABLF02008463    ABLF02021177    ABLF02027367    ABLF02066338    GEZM01053022    JAV74219.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBBI01004395    JAC14317.1    GFTR01008262    JAW08164.1    NEVH01026386    PNF14434.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMS01017914    MBY87117.1    NEVH01008277    PNF34262.1    NEVH01016340    PNF25410.1    NEVH01007402    PNF35856.1    KQ459265    KPJ02064.1    NEVH01015305    PNF27092.1    NEVH01021925    PNF19341.1    NEVH01023979    PNF17579.1    NEVH01001347    PNF42959.1    ABLF02017813    NEVH01014858    PNF27387.1    ABLF02025082    ABLF02039175    ABLF02041809    NEVH01019964    PNF22161.1    NEVH01007838    PNF34986.1    NEVH01006736    PNF36716.1    NEVH01005277    PNF39135.1    NWSH01000032    PCG80496.1    NEVH01002716    PNF41415.1    NEVH01006754    PNF36554.1    GFTR01008038    JAW08388.1    ABLF02050434    ABLF02064867    AB018558    BAA76304.1    GGMR01004661    MBY17280.1    GBBI01004571    JAC14141.1    GFXV01000908    MBW12713.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    AB055391    BAB21761.1    KQ973342    KXZ75569.1    GGMR01003864    MBY16483.1    ABLF02041861    NEVH01020940    PNF20481.1    GGMR01003407    MBY16026.1    GFTR01008246    JAW08180.1    NEVH01002556    PNF42024.1    NEVH01022639    PNF18527.1    AF081103    AAC72921.1    ABLF02029306    ABLF02029314    ABLF02060138    GFTR01008254    JAW08172.1    GBBI01003810    JAC14902.1    GGMS01017365    MBY86568.1    GBGD01000415    JAC88474.1    ABLF02008677    ABLF02011967    ABLF02052409    ABLF02056408    NEVH01016302    PNF25823.1    GGMR01012283    MBY24902.1    GBBI01003747    JAC14965.1    GGFL01004957    MBW69135.1    GGMR01019198    MBY31817.1    KU543687    AMS38379.1    NEVH01006721    PNF37225.1    GGMR01020516    MBY33135.1    U07847    AAA17752.1    M22874    M38643    GBGD01000389    JAC88500.1    GGMS01006359    MBY75562.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    KQ973363    EFA13335.2    GFTR01007997    JAW08429.1    GGFL01005012    MBW69190.1    GEZM01084969    JAV60363.1    NEVH01023280    PNF18085.1    GGMS01000737    MBY69940.1    GGMR01000676    MBY13295.1    GBHO01008295    JAG35309.1    GFDL01000004    JAV35041.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000054359    UP000053268    + More
UP000007266    UP000002358   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    P21328   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF03184   DDE_1
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR004875   DDE_SF_endonuclease_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   X1WZH0   A0A1Y1NA23   J9KPF1   + More
J9LC21   J9JS95   J9LFC9   J9LF86   X1WLB2   A0A2J7Q6J2   V5GNJ2   A0A2J7PBY3   A0A2J7QY69   A0A2J7PU96   A0A2J7QR37   A0A224X6Q4   A0A087UCW3   X1XGU0   A0A1Y1KUU7   J9KCZ4   X1WN18   A0A1Y1LKN6   A0A0A9YJ00   A0A023EYS8   A0A224XB44   A0A2J7PDM0   A0A0A9YU04   A0A2S2RAN7   A0A2J7R098   A0A2J7Q9Z1   A0A2J7R4U3   A0A0N1PFV1   A0A2J7QES2   A0A2J7PSM7   A0A2J7PMN4   A0A2J7RQ52   J9LF85   A0A2J7QFL0   J9LR29   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7R7D0   A0A2J7RE85   A0A2A4K918   A0A2J7RKP3   A0A2J7R6U1   A0A224XF24   X1WQR0   Q9XXW0   A0A2S2NJB5   A0A023EZE6   A0A2H8TF37   A0A139WA11   V5GNF3   Q9BPQ0   A0A139W8G9   A0A2S2NH02   J9LYS0   A0A2J7PVX3   K7IN67   A0A2S2NGV8   A0A224XIB0   A0A2J7RMG0   A0A2J7PQB5   O96546   J9KKL3   A0A224XHW8   A0A023F069   A0A2S2R9D4   A0A069DZL8   J9JUG3   A0A2J7QB68   A0A2S2P6C4   A0A023F0I3   A0A2M4CV52   A0A2S2PR14   A0A142LX53   A0A2J7R8R8   A0A2S2PUS3   Q93137   P21328   A0A069DX78   A0A2S2QEE0   A0A1Y1K0C8   D7GYA5   A0A224XK92   A0A2M4CV42   A0A1Y1KFR3   A0A2J7PP17   A0A2S2PX53   A0A2S2N814   A0A0A9YSX4   A0A1Q3G5F7  

PDB

6AR3     E-value=0.000272896,     Score=108

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519   GO:0003676  

Length:

803

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07449

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00227

outside

1  -  803

 

 

Pi

264.497912

Theta

162.461087

Tajima's D

1.75602

CLR

0.068028

CSRT

0.843957802109894

Interpretation

Uncertain