Gene

KWMTBOMO11205

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr19(-):696089-698737      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.932

CDS

ATGGCTAGCCAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAACCCCGCAAGAACGAGCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTCCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAGGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTCACACTGGGAATGGGGCTTACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGCCTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTTGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGACGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGCCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCTACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATCTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAGTCGGCTTAACCGGAGTGATATGGGAGTGCTCATAA

Protein

MASQELRIIYWNPGGVKPRKNELLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYAAYRPPGPDFHPGDIRRVLNCDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAVMLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVPPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLGATGTPGYGKIVGLTGVIWECS

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   A0A1Y1NA23   J9LFC9   A0A2S2NJB5   + More
X1WZH0   A0A2J7Q6J2   A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2J7PU96   A0A2J7RE85   J9LC21   V5GNJ2   X1WLB2   A0A224X6Q4   J9JS95   A0A023EYS8   A0A2J7R7D0   A0A1Y1K0C8   A0A2J7R4U3   A0A2J7PDM0   X1WXR6   A0A2M4CV52   A0A224X7Z3   A0A2J7R098   A0A2J7PMN4   A0A2J7PSM7   A0A2J7QES2   A0A2J7RQ52   A0A2J7Q9Z1   A0A2J7QB68   J9KPF1   A0A2S2Q383   A0A087UCW3   A0A0J7MTN6   A0A069DX78   A0A087U3K8   A0A2S2NGV8   A0A2S2R9D4   A0A2A4IUM2   A0A224XHW8   A0A023EZE6   A0A069DZL8   A0A0A9YJ00   A0A0A9YU04   A0A2S2P6S3   A0A2H8TF37   P21328   V5GNF3   A0A224X6R6   A0A2A4K918   A0A2J7PP17   A0A023F0I3   A0A1Y1KFR3   A0A139W8G9   A0A2J7RMG0   K7IN67   Q9BPQ0   Q9XXW0   A0A224XIB0   A0A023F069   A0A2S2Q2R8   A0A2S2PA10   A0A224X6W2   A0A1Q3G5J4   A0A142LX53   A0A224X6S1   A0A087T3W0   A0A146KRW8   A0A2S2N6Q7   J9LF85   A0A2S2P6C4   A0A2J7RD70   V9GZF1   V9GZA2   A0A0H3UA66   Q24335   A0A2S2PHL7   A0A2S2N814   A0A224XF24   A0A1Q3G5F7   A0A2S2P7B2   Q93137   A0A2M4BD66   A0A2S2NH02   A0A2S2NCK2   A0A2M4BDA5   A0A2M4BD62   A0A087UGF5   A0A2H8TKI9   A0A0J7K3N0   A0A1W7R668   Q8I7P8  

EC Number

2.7.7.49

Pubmed

28004739    25474469    26334808    25401762    2463954    3040362    + More
1714378    18362917    19820115    20075255    10333566    25527032    26823975    1327974    8394766    26812285    2441397   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    + More
ABLF02008464    GEZM01008457    JAV94772.1    ABLF02023911    GGMR01004661    MBY17280.1    ABLF02034467    NEVH01017470    PNF24199.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    NEVH01005277    PNF39135.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GALX01005299    JAB63167.1    ABLF02042518    ABLF02057746    GFTR01008279    JAW08147.1    ABLF02028535    ABLF02028545    GBBI01004395    JAC14317.1    NEVH01006736    PNF36716.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    NEVH01007402    PNF35856.1    NEVH01026386    PNF14434.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    GGFL01004957    MBW69135.1    GFTR01007929    JAW08497.1    NEVH01008277    PNF34262.1    NEVH01023979    PNF17579.1    NEVH01021925    PNF19341.1    NEVH01015305    PNF27092.1    NEVH01001347    PNF42959.1    NEVH01016340    PNF25410.1    NEVH01016302    PNF25823.1    ABLF02041767    GGMS01002992    MBY72195.1    KK119261    KFM75202.1    LBMM01018163    KMQ83860.1    GBGD01000389    JAC88500.1    KK118005    KFM71947.1    GGMR01003407    MBY16026.1    GGMS01017365    MBY86568.1    NWSH01007753    PCG62823.1    GFTR01008254    JAW08172.1    GBBI01004571    JAC14141.1    GBGD01000415    JAC88474.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMR01012443    MBY25062.1    GFXV01000908    MBW12713.1    M22874    M38643    GALX01005359    JAB63107.1    GFTR01008269    JAW08157.1    NWSH01000032    PCG80496.1    NEVH01023280    PNF18085.1    GBBI01003747    JAC14965.1    GEZM01084969    JAV60363.1    KQ973342    KXZ75569.1    NEVH01002556    PNF42024.1    AB055391    BAB21761.1    AB018558    BAA76304.1    GFTR01008246    JAW08180.1    GBBI01003810    JAC14902.1    GGMS01002786    MBY71989.1    GGMR01013409    MBY26028.1    GFTR01008260    JAW08166.1    GFDL01000006    JAV35039.1    KU543687    AMS38379.1    GFTR01008271    JAW08155.1    KK113281    KFM59799.1    GDHC01020244    JAP98384.1    GGMR01000226    MBY12845.1    ABLF02017813    GGMR01012283    MBY24902.1    NEVH01005295    PNF38784.1    M95171    AAA29354.1    M91082    AAA28291.1    KF280391    AIE77315.1    M17214    AAA28508.1    GGMR01016296    MBY28915.1    GGMR01000676    MBY13295.1    GFTR01008038    JAW08388.1    GFDL01000004    JAV35041.1    GGMR01012676    MBY25295.1    U07847    AAA17752.1    GGFJ01001844    MBW50985.1    GGMR01003864    MBY16483.1    GGMR01002322    MBY14941.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    KK119692    KFM76444.1    GFXV01002840    MBW14645.1    LBMM01015125    KMQ84919.1    GEHC01000978    JAV46667.1    AY180919    AAN87272.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000054359    UP000036403    + More
UP000007266    UP000002358   

PRIDE

P21328    Q9BPQ0    Q9XXW0    Q24335    Q93137    Q8I7P8    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   A0A1Y1NA23   J9LFC9   A0A2S2NJB5   + More
X1WZH0   A0A2J7Q6J2   A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2J7PU96   A0A2J7RE85   J9LC21   V5GNJ2   X1WLB2   A0A224X6Q4   J9JS95   A0A023EYS8   A0A2J7R7D0   A0A1Y1K0C8   A0A2J7R4U3   A0A2J7PDM0   X1WXR6   A0A2M4CV52   A0A224X7Z3   A0A2J7R098   A0A2J7PMN4   A0A2J7PSM7   A0A2J7QES2   A0A2J7RQ52   A0A2J7Q9Z1   A0A2J7QB68   J9KPF1   A0A2S2Q383   A0A087UCW3   A0A0J7MTN6   A0A069DX78   A0A087U3K8   A0A2S2NGV8   A0A2S2R9D4   A0A2A4IUM2   A0A224XHW8   A0A023EZE6   A0A069DZL8   A0A0A9YJ00   A0A0A9YU04   A0A2S2P6S3   A0A2H8TF37   P21328   V5GNF3   A0A224X6R6   A0A2A4K918   A0A2J7PP17   A0A023F0I3   A0A1Y1KFR3   A0A139W8G9   A0A2J7RMG0   K7IN67   Q9BPQ0   Q9XXW0   A0A224XIB0   A0A023F069   A0A2S2Q2R8   A0A2S2PA10   A0A224X6W2   A0A1Q3G5J4   A0A142LX53   A0A224X6S1   A0A087T3W0   A0A146KRW8   A0A2S2N6Q7   J9LF85   A0A2S2P6C4   A0A2J7RD70   V9GZF1   V9GZA2   A0A0H3UA66   Q24335   A0A2S2PHL7   A0A2S2N814   A0A224XF24   A0A1Q3G5F7   A0A2S2P7B2   Q93137   A0A2M4BD66   A0A2S2NH02   A0A2S2NCK2   A0A2M4BDA5   A0A2M4BD62   A0A087UGF5   A0A2H8TKI9   A0A0J7K3N0   A0A1W7R668   Q8I7P8  

PDB

6AR3     E-value=0.000880466,     Score=104

KEGG

101739313    no KO assigned | (RefSeq) uncharacterized LOC101739313

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003676   GO:0008270  

Length:

811

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16861

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00046

outside

1  -  811

 

 

Pi

347.485524

Theta

161.530635

Tajima's D

3.695526

CLR

0.270865

CSRT

0.996850157492125

Interpretation

Uncertain