SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11032
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 2.562
 

Sequence

CDS
ATGGCGGCCATTAGGGAGCGCCTCGGTAGGGCTCTTTCTGCCAGACCCCACGGCGCCGGTTTCCGCTTCCTGCCGTCATCGGCGGAGGAGTACAGGGTGATCCAGGACTATCTTTCGAGGGCATCCGCTGCAGACAAAACCATTAAATGGTTTTGTTACGCGCTGTCGGAGGAAATACCCTCGAAGGTGGCTGTTCGGGGTCTCCCTGCGGACACCGATGCGGCGGAAGTAACGAACGCCCTCAAGGAGCTGGGCTTTCCTGCCCGATATGCCCGGTGCATCCAGGCCAAGAGGGGGAGACAGGGCTGCGTATTTTTCGTGGCTCTGGACCACCTCTCCAAGGGTGACCTCGCCCGGCTGTATACAGTTAACGAACTGTTATACTTGCCGGGGGTGACGGTCGAGGGATGGCGTCCAACCCGGGGACCTGCGCAGTATCACCGCTGCCAGGCCTTCGGGAACGCGTCCACGAACTGTCACCGTGCGGTCCGCTGCGTTCGATGTGCCGGCGAGCACATTGTGGCGGACTGCCCGAGGCCAAGGGATGGCCCATTATCCTGTGCTAATTGCGGGAAGGACCACGCCGCCATCGATCGGCGGTGTGTGGTCTACCGCAAGAGGGCCAGGATGATGGGAGTAACCATCCCCCCTCCTGTTCCACCGGTGCCACGGCCCAGGAATGTCCCAGCTCCAGCAGCTGCTCCTGTCGTCTCTGCACCCATCCCCAAGGGGAAGGGGAAGGGGAAAGGGAAATCCTCCCAAACCCCAGCCCCTCCCCCTCCTAGTACCTATCCGTCTGTCTCGGTGGTGGAGGCTGGGCCGTCAGCGGCCACGTTGATGGCGCAGGCCAACCCACCGAGGCGGCCAAATAAACCTACCCCTACTCCTCGTGGCCGAGCTAACATCGCTCTAACAACCGCGATCATGCCCCCAGCTCAGACTCAGAGCATCGGCAACAAGAAAAAGGAGAAGAATAGGAAAAAGAAACTAAAAAGGAAACTGAGGAAAAAGAAAGAAAGAGAAGAAGTTAACAGGGGTACTACCGAGCCCATCGTGCCGGATTCCCCACCCGCCCATGCTGAGGCGATGATCATCAATGATCAGCCACCTCCAAGCGTCAGCCCAACACCTGAGGCTCCCTCAATCGAGCCTAATTTAAATACACAGCCCCCCCCCCCCGCCCTCAGCGCGAGCAGCGCAGCGGTCGGCAGGCCTCACAACCTGCCGGCTTTGCTGCATGGCTTCTCGCGCTCTGGGAGAAATTGTCCGAGTTCAATGGCTAGCCAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAACCCCGCAAGAACGATCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTCCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCACCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAACGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGTCTGCCCCGACTTGTCCACTCGGGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGCGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTTGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGACCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGGTCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAATACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGCATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCGCGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTAGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGCTCGATCACCCTATTCGCTCCTACGATGGTTAG
Protein
MAAIRERLGRALSARPHGAGFRFLPSSAEEYRVIQDYLSRASAADKTIKWFCYALSEEIPSKVAVRGLPADTDAAEVTNALKELGFPARYARCIQAKRGRQGCVFFVALDHLSKGDLARLYTVNELLYLPGVTVEGWRPTRGPAQYHRCQAFGNASTNCHRAVRCVRCAGEHIVADCPRPRDGPLSCANCGKDHAAIDRRCVVYRKRARMMGVTIPPPVPPVPRPRNVPAPAAAPVVSAPIPKGKGKGKGKSSQTPAPPPPSTYPSVSVVEAGPSAATLMAQANPPRRPNKPTPTPRGRANIALTTAIMPPAQTQSIGNKKKEKNRKKKLKRKLRKKKEREEVNRGTTEPIVPDSPPAHAEAMIINDQPPPSVSPTPEAPSIEPNLNTQPPPPALSASSAAVGRPHNLPALLHGFSRSGRNCPSSMASQELRIIYWNPGGVKPRKNDLLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYAAYRPPGPDFHPGDIRRVLNCDSHPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELETELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRSAPTCPLGDERGNRCFSAQARADVLAVMLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRLFNSILSTGHFPGIWKLGKVIALTKPGKDRRNPSSYRPVTLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTHVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPREHLHNIAPLHARPPDGRALPRELLEPPAMLDHPIRSYDG

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D
PDB
6AR3     E-value=0.00589573,     Score=98

Ontologies

Topology

Length:
1281
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01386
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00019
outside
1  -  1281
 
 

Population Genetic Test Statistics

Pi
28.729077
Theta
183.769125
Tajima's D
1.885069
CLR
16.989191
CSRT
0.859007049647518
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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