Silkworm Genome Informatics Database

Gene

KWMTBOMO11032

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr18(+):10296219-10301204 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.562

CDS

ATGGCGGCCATTAGGGAGCGCCTCGGTAGGGCTCTTTCTGCCAGACCCCACGGCGCCGGTTTCCGCTTCCTGCCGTCATCGGCGGAGGAGTACAGGGTGATCCAGGACTATCTTTCGAGGGCATCCGCTGCAGACAAAACCATTAAATGGTTTTGTTACGCGCTGTCGGAGGAAATACCCTCGAAGGTGGCTGTTCGGGGTCTCCCTGCGGACACCGATGCGGCGGAAGTAACGAACGCCCTCAAGGAGCTGGGCTTTCCTGCCCGATATGCCCGGTGCATCCAGGCCAAGAGGGGGAGACAGGGCTGCGTATTTTTCGTGGCTCTGGACCACCTCTCCAAGGGTGACCTCGCCCGGCTGTATACAGTTAACGAACTGTTATACTTGCCGGGGGTGACGGTCGAGGGATGGCGTCCAACCCGGGGACCTGCGCAGTATCACCGCTGCCAGGCCTTCGGGAACGCGTCCACGAACTGTCACCGTGCGGTCCGCTGCGTTCGATGTGCCGGCGAGCACATTGTGGCGGACTGCCCGAGGCCAAGGGATGGCCCATTATCCTGTGCTAATTGCGGGAAGGACCACGCCGCCATCGATCGGCGGTGTGTGGTCTACCGCAAGAGGGCCAGGATGATGGGAGTAACCATCCCCCCTCCTGTTCCACCGGTGCCACGGCCCAGGAATGTCCCAGCTCCAGCAGCTGCTCCTGTCGTCTCTGCACCCATCCCCAAGGGGAAGGGGAAGGGGAAAGGGAAATCCTCCCAAACCCCAGCCCCTCCCCCTCCTAGTACCTATCCGTCTGTCTCGGTGGTGGAGGCTGGGCCGTCAGCGGCCACGTTGATGGCGCAGGCCAACCCACCGAGGCGGCCAAATAAACCTACCCCTACTCCTCGTGGCCGAGCTAACATCGCTCTAACAACCGCGATCATGCCCCCAGCTCAGACTCAGAGCATCGGCAACAAGAAAAAGGAGAAGAATAGGAAAAAGAAACTAAAAAGGAAACTGAGGAAAAAGAAAGAAAGAGAAGAAGTTAACAGGGGTACTACCGAGCCCATCGTGCCGGATTCCCCACCCGCCCATGCTGAGGCGATGATCATCAATGATCAGCCACCTCCAAGCGTCAGCCCAACACCTGAGGCTCCCTCAATCGAGCCTAATTTAAATACACAGCCCCCCCCCCCCGCCCTCAGCGCGAGCAGCGCAGCGGTCGGCAGGCCTCACAACCTGCCGGCTTTGCTGCATGGCTTCTCGCGCTCTGGGAGAAATTGTCCGAGTTCAATGGCTAGCCAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAACCCCGCAAGAACGATCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTCCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCACCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAACGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGTCTGCCCCGACTTGTCCACTCGGGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGCGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTTGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGACCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGGTCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAATACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGCATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCGCGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTAGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGCTCGATCACCCTATTCGCTCCTACGATGGTTAG

Protein

MAAIRERLGRALSARPHGAGFRFLPSSAEEYRVIQDYLSRASAADKTIKWFCYALSEEIPSKVAVRGLPADTDAAEVTNALKELGFPARYARCIQAKRGRQGCVFFVALDHLSKGDLARLYTVNELLYLPGVTVEGWRPTRGPAQYHRCQAFGNASTNCHRAVRCVRCAGEHIVADCPRPRDGPLSCANCGKDHAAIDRRCVVYRKRARMMGVTIPPPVPPVPRPRNVPAPAAAPVVSAPIPKGKGKGKGKSSQTPAPPPPSTYPSVSVVEAGPSAATLMAQANPPRRPNKPTPTPRGRANIALTTAIMPPAQTQSIGNKKKEKNRKKKLKRKLRKKKEREEVNRGTTEPIVPDSPPAHAEAMIINDQPPPSVSPTPEAPSIEPNLNTQPPPPALSASSAAVGRPHNLPALLHGFSRSGRNCPSSMASQELRIIYWNPGGVKPRKNDLLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYAAYRPPGPDFHPGDIRRVLNCDSHPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELETELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRSAPTCPLGDERGNRCFSAQARADVLAVMLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRLFNSILSTGHFPGIWKLGKVIALTKPGKDRRNPSSYRPVTLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTHVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPREHLHNIAPLHARPPDGRALPRELLEPPAMLDHPIRSYDG

Uniprot

A0A2J7R7D0 A0A2J7R4U3 A0A2J7QB68 A0A2S2QEE0 A0A2S2NPG3 A0A2S2N814 + More
A0A2S2N6Q7 A0A2S2P7B2 Q9XXW0 A0A224X6W2 A0A023F0I3 A0A2M4BD83 A0A2S2NPJ7

Pubmed

10333566 25474469

EMBL

NEVH01006736 PNF36716.1 NEVH01007402 PNF35856.1 NEVH01016302 PNF25823.1 + More
GGMS01006359 MBY75562.1 GGMR01006408 MBY19027.1 GGMR01000676 MBY13295.1 GGMR01000226 MBY12845.1 GGMR01012676 MBY25295.1 AB018558 BAA76304.1 GFTR01008260 JAW08166.1 GBBI01003747 JAC14965.1 GGFJ01001822 MBW50963.1 GGMR01006491 MBY19110.1

Proteomes

UP000235965

PRIDE

Q9XXW0

Pfam

PF14529 Exo_endo_phos_2 + More
PF00078 RVT_1

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

A0A2J7R7D0 A0A2J7R4U3 A0A2J7QB68 A0A2S2QEE0 A0A2S2NPG3 A0A2S2N814 + More
A0A2S2N6Q7 A0A2S2P7B2 Q9XXW0 A0A224X6W2 A0A023F0I3 A0A2M4BD83 A0A2S2NPJ7

PDB

6AR3 E-value=0.00589573, Score=98

KEGG

105842439 no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964 GO:0004519

Length:

1281

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01386

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00019

outside

1 - 1281

Pi

28.729077

Theta

183.769125

Tajima's D

1.885069

CLR

16.989191

CSRT

0.859007049647518

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree