Silkworm Genome Informatics Database

Gene

KWMTBOMO10839

Pre Gene Modal

BGIBMGA008453

Annotation

PREDICTED:_zinc_finger_protein_677-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(+):5040439-5048665 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.606

CDS

ATGGAGGGGTTCTGTCGGGGATGTCTAATAAAATATGATGAACCTATGGAGCTTGTACAATACAGTGAGAAGAATAGAAGATTGTTCATGTACTCTACTGGTTTGCAGGCAAAACGAAATGATTCATTCACGTTTCAACTTTGCAAAGATTGTTATTTAAATATGAAGACAGCATGTAAATTCAAAAAACAATGTCGCTCTTCAGATAAAAAGCTAAAAAATTTTGTGGCAATGAAAAATAATGGCGATGATGTTGATTTCTGTAATTTTTTAAAGAACAGTGACCATCCTTTCACTTTTAGATTTCCTACAATGACTGGGAACAATACACCTGCAACTCAAGGAGATGATGATAATGAATCTGTATGCACAAGCATACGCAACTTCATGACCGACATCCTACAGGGCGAGGAGGTACCGGATGCTGAAGCCAGGATCATACGAGAGGTGATTGAAGAAGAGGCTGACGTTTTGGATGATTCATTAGATTCTCAGTGGCTTCAGGATGATGTATCCATTGATACAGATTTTAGATTGGACTTTAATTTCAGTCCGTTTTCAACACCGCGCTCGATTGAGAATGATCATTGTTACACGCCTAAAAAAAGCCCTGTACAGAAGGACCAATTGAATATCAATTATTATGCAAATAATAAAATCATGGACCAACAAAAGGAAAACATTGAAGAAAACGATAAAGAAATCGATTTTTTTGGTTACAATAATGGTGATATTAAAAGTAACGTAATTATTGATAACAATTACATTGATGAAATACAAAATGACCTACTGTATGATATAAATTCTGAGAACTGTAAAGACGATTTAAATGTAAACATTAATGTTGACGCAAATCTCGATTATCAAGTTAATGATGGTAATAAAACCAAAGAAAATAAACACGTAGAAGTAAATAACATTCTAATAGAAAATAATTCACAAAATAATGCTACAAAACAAGAAAAGGTTTTGGGACAATTTTATCTTCCCGGGGACATAACAAAGAAAAATATTGCCCTGGATAATAATGATGTACAAAATGGAGCAAAAGACAACATAGACAAAAACTTGGAGCAAGCCTTGAAAAATGAACTCAATACGGAATTTTCTTTAGAGGGGTTGCTAGCGTCACCGACAGTATTACCGAGACTGTCAACGCCCGTCACGCCAATCATAAACAATATTTTATTTGGAGATAAAATAGATTTAGAATCTCAGAGCAATGGAAGCGACCACAAAACTGGTCAATGCATAGAGAAATATGAAAACGTCGAAGGAAATATAGAAATTTTAGAAGAATTCTTTAATATGAAAAATTCTAATTTCAATTTAGACGATGAAAACAGCATGATAGATGCGAATAAAAACACTGATGTCGCGAAATCAATGAACGAATTGTTCGATTTAGAAAATTGTTTCTGTAAGGAATGTAAGAAGAAATTCAAGGATATGAAAGCGCTTAGGATACACTCGCGGAAGATTCATCGTTACACAATTAAGAATCCTAATAAAGACGATCACAGATACAAGCGAAGGATATGCGATAAATGTGGCAAAGAATTCAATGACATGGCTCGTTTCTGTAGACACAAGAAGCAGCATGCAAATGAGAACAAAATTTATCGTTGCGACCAGTGCATGCTCACGTTCACTTCGCAGAGGACAAAGGATATGCACATGGTTACGCACACGGGCATAACAACGGAGAAAGTTTCTAAAAAGAAATACGTGTGCAATATATGCGGGGTGACGATTAACTCATACAGTAACCTGCGACTTCACATGAAGCGACACGCGAAGACTTACACATTGAAATGCGAAGATTGCGGGAAAGGTTTCTTCAGAAGATACGATTTGACTATTCATATGAGAACTCATACGGGCGATCAACCCTTTAAATGCGGGTTTTGTGAGCGGTCGTTCTCGAGGCGGACCACCTTAATAAGTCACATACAAACGCACACGGGACCGGGTTATGTATGCGACTACTGTCACACAAAATTCGCAATGAAACGATACATAGTGCGTCACTTGATGAAAAGCAAAAAATGTTACGAGATTCGAGACCGAAGATTGAAAACTGAAAAATCTAAAGGAACAGATGCTTCTATTAAGGGACCTAAGGATACGACTGATGAAGAAATATCGACTAATAAAAAAACGCCGAAAAAGCGACTGGTGAATCGTGACTGA

Protein

MEGFCRGCLIKYDEPMELVQYSEKNRRLFMYSTGLQAKRNDSFTFQLCKDCYLNMKTACKFKKQCRSSDKKLKNFVAMKNNGDDVDFCNFLKNSDHPFTFRFPTMTGNNTPATQGDDDNESVCTSIRNFMTDILQGEEVPDAEARIIREVIEEEADVLDDSLDSQWLQDDVSIDTDFRLDFNFSPFSTPRSIENDHCYTPKKSPVQKDQLNINYYANNKIMDQQKENIEENDKEIDFFGYNNGDIKSNVIIDNNYIDEIQNDLLYDINSENCKDDLNVNINVDANLDYQVNDGNKTKENKHVEVNNILIENNSQNNATKQEKVLGQFYLPGDITKKNIALDNNDVQNGAKDNIDKNLEQALKNELNTEFSLEGLLASPTVLPRLSTPVTPIINNILFGDKIDLESQSNGSDHKTGQCIEKYENVEGNIEILEEFFNMKNSNFNLDDENSMIDANKNTDVAKSMNELFDLENCFCKECKKKFKDMKALRIHSRKIHRYTIKNPNKDDHRYKRRICDKCGKEFNDMARFCRHKKQHANENKIYRCDQCMLTFTSQRTKDMHMVTHTGITTEKVSKKKYVCNICGVTINSYSNLRLHMKRHAKTYTLKCEDCGKGFFRRYDLTIHMRTHTGDQPFKCGFCERSFSRRTTLISHIQTHTGPGYVCDYCHTKFAMKRYIVRHLMKSKKCYEIRDRRLKTEKSKGTDASIKGPKDTTDEEISTNKKTPKKRLVNRD

Uniprot

H9JG06

Pubmed

19121390

EMBL

BABH01001765

Proteomes

UP000005204

PRIDE

H9JG06

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JG06

PDB

2I13 E-value=1.54531e-24, Score=282

KEGG

101742108 no KO assigned | (RefSeq) zinc finger protein 569-like

GO

GO:0003676 GO:0046872 GO:0005634 GO:0008270 GO:0005515 GO:0051028 GO:0005622 GO:0006810 GO:0003824

Length:

730

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00336

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00008

outside

1 - 730

Pi

20.361407

Theta

175.028521

Tajima's D

0.498738

CLR

0.377876

CSRT

0.519174041297935

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics