SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10837
Pre Gene Modal
BGIBMGA008374
Annotation
PREDICTED:_B-cell_lymphoma/leukemia_11A_[Papilio_machaon]
Location
Bomo_Chr18(-):4700918-4724578      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.585
 

Sequence

CDS
ATGTTACGGATACCAACTATTGTTTTATGCCGCTCCTTTTTCCCAGCGGATGCGGACAGCGCGGCAGAGGGCGGTGGATCTCCAACGCCCGGAGTTCCAGCAGATACCCTGACCTGTGGGGCCTGCAGGAGAGCGTTTGCGCTGGCTGACATAATCAGGTTCATCCAGCACAAAGTCTCGTCCTGCGATAAAGAGCTCACGTCTTATCACTGCTATAGCGCTGGTCCGAATTCAGACCAGGAAGACGGGTCCAGGCCAGGTCAGGTTTCAACAGCGAACTCTAGCGGTCGAAGACCCTCGCTTCTGACCGCAAGGCGACTTCCGAACAGCAGGATCCACACACCGCCTTTGGCTAGTCCATCAATAGCACCGCCTGACCTTTTAGAAGATGGAGGCGCTTCGAGCACTCCAAAAAGACTTCTCGATGAAGCCGAAACTGAAACCTCAACACCCAAACGGCGGGCCTCAACATCACCGTTACCTTCAAGTTCGCCTGATGAAGATATCAAGCCTAAGATCAAGCAAGAGCGTATGGATACATCGGGATCTCCTGAAGACCAGAAAAAGTCGAGAACCGAGGTTGCCGACGCTGAATCAAATACCATGCATAGTGAGCCGAGTAACTACGTTTGTTCAACTTGCAAGGCTCGCGTGCACTCTGCGTGGAGATTACTTCAACACGTCCAACACGTGCACGGCGTTAAAATTTACGTGGAAACATTGCCCCAACCGCATCTCAACAAACAGAACCATTCATCATCAAGCACGTCTTCCTCAAGTTCTGGTTGTTCTTCTACGGGTGCACCTCTTCCTCCGCCCACATTGCGCCATCATCCTCTACTGCCACCTCCAGACATGCATTCCCCTTTTGGAGTTGGTGGTCTTTTGCGAATGCCGCTACCTGGTAGTCTACCTCCATTAGCCCACCCATCTGTTCCTCCAGCTCCATTATTTGCTCGGCCGAATCACCATGACCATCGCTTTAGAATGGAACAACTCGTTTCGGAACAATTTCGTCACCACGGACTGAACCTTGCAGCCGCAGCGGCCGCTGTAGCTGCTAACTCCCTTCCACCACATCAGGCGTTTCCGTCACCGGCGGATCGACCACCTGTAATACCAACAACAGTATCAGCTCGAGACAGACCACCACCAGTATCTCAACCACTTTCACTTGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCAATTCGAGCTCTCCTAGCCCCAGGAAGCATTCGCCTCCGTTCGCTTCCCCGTCGCCCTCCCGAGTCGGTCAGACTCCACCGGTGGGCGCCGGACCCGGAACGGTGGATACCCCTCGTGAAGCGATCAAACCACATAGCTCGACTTCACCAGAACGCCGAATAGAGCCAATGGCAGCCGATGCTCCCCCTCCCGAGCGCTCCACGTCTACTCCGCCAGTGAAACGCAACAACGATGAGGCTATACATTCCTGTGAGTTTTGTGGCAAGAAATTTAGATTCGAAAACAATTTAATTGTACATCGACGCTCTCATACTGGGGAAAAACCCTTCAAATGCAGCGAATGTGATGAAACTTTTGAAAAAGCATCTAAATTAAAGAAACACATGAAAGTACATCGATTACCAGATGTAAATGGTGAAGATGGAGAATCTGGTGGCGACACTGGAGAAGATGATTCTGATGATGACATGGAAGATGAGGAGCTCGAAGGTGAAGACGAAGAAGAAAATGAAGATGGAGAAGATGTAGAGGAAGCAGAAGATCTAACTGTTTCCAATAGTAGTGCTCCTACTGCACCTTCGAGGAAGCAGACTCCAGCGATACCCGCACATCCCCCAACGGCTTCTGTTGTTGGAGAATTAATGGATAAATTTGGACTATCAAATATTGCTCAATATAGCGAAGCTTTCAAACAAGCACTCCAAGAATCTGGAAACTCACTGAAATGGCAGCTTGCGAAAGATCGGGATAATAATAATGGCCCTCCTAGTGACAAACCAAATGGTATGCCACCGACAGCAGCTTTACGGTTAAAAGAAGAATTTGCCAAAATGCCGCCACAGCCCCATCCTCTTTTTAACCCTTTTGAAAATCCTTTCGAAGCTTCTAAGCGAATGAAACTGGATATGGAGAGAAGTGAAGGATGGTGGCTTCCCACATTGCATGCCCAGAGACCTCCTGAAAATATATTTGAAGGCCTTAAAAACAGCGGTAACGGCCTTCTCCAGAACCCTTTATTAAAATCTAAAGACGGACGGCGGAATGATACCTGCGAATTTTGTGGCAAAGTATTCAAGAATTGCTCCAATTTGACGGTTCATCGTAGATCTCACACCGGCGAAAAACCTTACAAATGTGAGCTATGTTCCTATGCGTGCGCTCAGAGCTCAAAGCTCACTAGGCACATGAAAACTCACGGCCGACTCGGCAAAGACGTGTATCGATGCAGATTTTGCGAGATGCCTTTCTCTGTGCCCTCGACTTTAGAGAAGCATATGCGCAAGTGCGTTGTGAACCAAAGCAACGGCGCTCCTTTGGCCTTGTCGGATGATTCTAACGCATGTAGAGACGAGGCCTCGTGA
Protein
MLRIPTIVLCRSFFPADADSAAEGGGSPTPGVPADTLTCGACRRAFALADIIRFIQHKVSSCDKELTSYHCYSAGPNSDQEDGSRPGQVSTANSSGRRPSLLTARRLPNSRIHTPPLASPSIAPPDLLEDGGASSTPKRLLDEAETETSTPKRRASTSPLPSSSPDEDIKPKIKQERMDTSGSPEDQKKSRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLLQHVQHVHGVKIYVETLPQPHLNKQNHSSSSTSSSSSGCSSTGAPLPPPTLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPAPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAANSLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVDTPREAIKPHSSTSPERRIEPMAADAPPPERSTSTPPVKRNNDEAIHSCEFCGKKFRFENNLIVHRRSHTGEKPFKCSECDETFEKASKLKKHMKVHRLPDVNGEDGESGGDTGEDDSDDDMEDEELEGEDEEENEDGEDVEEAEDLTVSNSSAPTAPSRKQTPAIPAHPPTASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPPSDKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRMKLDMERSEGWWLPTLHAQRPPENIFEGLKNSGNGLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS

Summary

Uniprot
A0A2A4K9K8   A0A2W1BRW8   A0A2H1VXK3   A0A212EM42   A0A1B0DE64   A0A1B0CQR4   + More
A0A336LNI0   A0A1B0BKD7   A0A1A9XLR8   A0A1I8QF70   A0A1I8QF72   A0A1I8QF34   A0A1I8QF39   A0A1I8QF61   A0A1I8QFC6   A0A1B0GB15  
Pubmed
28756777    22118469   
EMBL
NWSH01000028    PCG80578.1    KZ149919    PZC77788.1    ODYU01005042    SOQ45538.1    + More
AGBW02013930    OWR42553.1    AJVK01032592    AJWK01023901    UFQT01000021    SSX17937.1    JXJN01015900    CCAG010006525   
Proteomes
UP000218220    UP000007151    UP000092462    UP000092461    UP000092460    UP000092443    + More
UP000095300    UP000092444   
Pfam
PF00096   zf-C2H2
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF57667   SSF57667       
ProteinModelPortal
A0A2A4K9K8   A0A2W1BRW8   A0A2H1VXK3   A0A212EM42   A0A1B0DE64   A0A1B0CQR4   + More
A0A336LNI0   A0A1B0BKD7   A0A1A9XLR8   A0A1I8QF70   A0A1I8QF72   A0A1I8QF34   A0A1I8QF39   A0A1I8QF61   A0A1I8QFC6   A0A1B0GB15  
PDB
2M9A     E-value=3.08833e-12,     Score=177

Ontologies

KEGG
101739459    K22045 B-cell lymphoma/leukemia 11A | (RefSeq) B-cell lymphoma/leukemia 11A
GO
GO:0003676   GO:0046872   GO:0005524   GO:0005515   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

Topology

Length:
870
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00036
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00003
outside
1  -  870
 
 

Population Genetic Test Statistics

Pi
177.204672
Theta
175.990283
Tajima's D
-0.649898
CLR
100.439211
CSRT
0.203589820508975
Interpretation
Uncertain
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