SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10501
Annotation
gag-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.822
 

Sequence

CDS
ATGGAGTTCTCTCCAACCAACACACTGCTCGCGGAATTCTTAAGCGAGAAATACCCGGCCCTCGAAACAGAATTTTTAGCTTACAAAGCTAAACGCGCCGTGAACTGTTCTGCCGTGCCCGCCGCGACCGCCGTTTCCGCCACGCCTGCCATTCCCGCGTCCCCTGCAAGCGCGCGCAAAACTCCCGCGCCGTACACCGCAGCCTCCGTCGCGCCCAGCACACCCGTGTCACCCATACTCCCGCGAAAAACTCCCGCGTCTACCGCGGCAGCTTCCGTTATACCTCAGCGATCGTCTGCGGCCTCCGTCGCGTCCGCCGCTCCCGCGCCTTCCTCCTCGTCCTCCGACTCTGACTCGGATATGGAGGTTGACCTCGTTCCCGCCTCATTGACAGATGGATTCACCCTCGTGCAAAAGGGTAAGAAGCGCGCCGCGGAGTCCCGAGCTTCCGCGGCCGCTAAAATAAGCAAAGCCGCGAACGCGTCGCGTCCCCGCCCTCCGACCCCCGTCGCTCCCTGTCCCCGTGCCACGCCGTCGCCGCGCCCGGTGGCACAAACGGCCCCTCCTCCGTTAATTCTTCAAGAGAAGGCTGCTTGGGACCGTGTCTCCCTGGCCCTTAAGGCCAATAACATAAATTTTGTCAGTGCCCGTAACCTCGCGAACGGGATACAAATAAAAGTAGCAACACCCGACGACCATAGAGCCCTCTCAAGCTACCTCCGAAAGGAGCGTATAAGTTACCATACGTATACGCTCCAGGAGGAGCGTGAGCTCCGTGCAGTCATACGTGGCATCCCCAAGGAGTTAGATGCCGAGCTCGTAAAGGCCGACCTACTCGAACAAGGCCTACCCGTAAACTCCGTGCACCGCATGCACACAGGACGCGGGAGGGAGCCATACAATATGGTTCTCGTCGCCCTCCAGTCTACCCCCGAAGGTAAACAAATCTTTAACGTCCGAACGGTCTGTAGGCTTTCCGGAATCACTGTGGAAACCCCTCATAAAAAAGGCACTCCGAGCCAGTGCCACAATTGTCAGTTGTACGGGCATTCTTCCCGTAATTGTCACGCGCGCCCTCGATGCGTCAAGTGTTTGGACGATCACTCCACGACTCTTTGCACTCGCGATCAAAAAACCGCGACTGAACCACCTAGCTGCGTCCTGTGCCGAACACAGGGTCACCCCGCGAATTACCGTGGATGCCCCCGAGCCCCTAAAATAAATCGCCGCGTCGCGCGCCAAAACCGCCTCCGAGCTTCCGGCCCTGACATCAAAGCCACGGCACCCTCTGTGCCGAAGGCTAAGCCTGCCTTCGTGCCGGCGCCGGTGCCCAGCGGCTCGGCCTGGGCTAAACCGTTGCCGTACACGAACACGGCTGTAGCTCCCTCCCCCGCGATTCGTCCCGCCCCCGCGATACGTCCCTCCCCCGTGATTCGTTCCTCCCCCGCGACCAGCACTCCGACCGCGTCCGACAATCTCGCTCTAGCGATCGACTTTTTTCAGTCGATCAACTTTGAGCGTGTTAATGCTTTGGGTGACGCCATTCGCGCCGCCTCCACTGCACAACACTTCATCGCCGTTGTGCAAGAATACGCTGACGTATACGCGTCGTTAAATACGTACGTCCTCCCCTCACTCCGCCGGTAA
Protein
MEFSPTNTLLAEFLSEKYPALETEFLAYKAKRAVNCSAVPAATAVSATPAIPASPASARKTPAPYTAASVAPSTPVSPILPRKTPASTAAASVIPQRSSAASVASAAPAPSSSSSDSDSDMEVDLVPASLTDGFTLVQKGKKRAAESRASAAAKISKAANASRPRPPTPVAPCPRATPSPRPVAQTAPPPLILQEKAAWDRVSLALKANNINFVSARNLANGIQIKVATPDDHRALSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKQIFNVRTVCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHSTTLCTRDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKATAPSVPKAKPAFVPAPVPSGSAWAKPLPYTNTAVAPSPAIRPAPAIRPSPVIRSSPATSTPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR

Summary

Pfam
PF07530   PRE_C2HC
Interpro
IPR006579   Pre_C2HC_dom       
ProteinModelPortal

Ontologies

GO

Topology

Length:
548
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04486
Exp number, first 60 AAs:
0.03063
Total prob of N-in:
0.00181
outside
1  -  548
 
 

Population Genetic Test Statistics

Pi
111.984115
Theta
13.77562
Tajima's D
3.565642
CLR
223.599076
CSRT
0.994800259987001
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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