Gene

KWMTBOMO10480

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr17(-):12327866-12329846      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.093 Nuclear   Reliability : 1.473

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGCTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCTCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAAGTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATCGTCAACGATGTTCCCCGGTCGCCGCCGACCCATTTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPLNPDSIPSPQDTSEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVSMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLSSTMFPGRRRPI

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   K7IN67   V5GNJ2   A0A139WA11   A0A023EYS8   A0A2S2QEE0   A0A1Y1K0C8   J9LC21   A0A2S2PPK8   A0A2S2PEZ9   X1WNI2   V5GNF3   A0A2S2NJB5   A0A224XB44   X1WLB2   A0A224X6Q4   X1WZH0   A0A1B6C2V8   X1WVL6   J9KLB1   J9KPF1   A0A087UCW3   A0A2S2P6S3   A0A2S2NCK2   A0A2J7RE85   J9JS95   A0A224XF24   A0A2S2N6Q7   J9LFC9   A0A2J7QR37   A0A2S2NPT6   A0A2J7QY69   A0A2J7PBY3   A0A2J7PU96   A0A2S2PA10   J9M522   A0A2J7R7D0   A0A087U3K8   A0A2S2Q2R8   A0A224XI99   A0A224X6S1   A0A224X6T4   A0A224X6U5   A0A224X7Z3   A0A1Y1LKN6   A0A087T3W0   A0A232ENU1   A0A2S2PJG2   A0A2S2R9D4   A0A2M4CV52   A0A2S2P7B2   A0A2H8TF37   A0A2M4CV42   A0A224XIB0   A0A087THU2   A0A224X6W2   A0A2J7RMG0   A0A2S2Q383   A0A023EZE6   A0A2S2QDN9   Q95SX7   A0A2H8TKI9   A0A2S2P698   A0A224XJI0   A0A2S2PJ52   A0A2J7QB68   A0A3S2NJ07   A0A2S2Q352   A0A2S2N814   A0A224X746   A0A1Y1MT28   A0A0H3UA66   A0A2S2NGV8   J9LYS0   X1WXE6   A0A146KV64   A0A2S2P3X8  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    28648823    7753626    12537569    26812285    26823975   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01018716    MBY31335.1    GGMR01015412    MBY28031.1    ABLF02008153    ABLF02008462    ABLF02008464    GALX01005359    JAB63107.1    GGMR01004661    MBY17280.1    GFTR01008262    JAW08164.1    ABLF02042518    ABLF02057746    GFTR01008279    JAW08147.1    ABLF02034467    GEDC01029594    JAS07704.1    ABLF02042385    ABLF02040174    ABLF02040183    ABLF02055266    ABLF02041767    KK119261    KFM75202.1    GGMR01012443    MBY25062.1    GGMR01002322    MBY14941.1    NEVH01005277    PNF39135.1    ABLF02028535    ABLF02028545    GFTR01008038    JAW08388.1    GGMR01000226    MBY12845.1    ABLF02023911    NEVH01011985    PNF31054.1    GGMR01006581    MBY19200.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01021205    PNF19912.1    GGMR01013409    MBY26028.1    ABLF02024246    NEVH01006736    PNF36716.1    KK118005    KFM71947.1    GGMS01002786    MBY71989.1    GFTR01008256    JAW08170.1    GFTR01008271    JAW08155.1    GFTR01008261    JAW08165.1    GFTR01008251    JAW08175.1    GFTR01007929    JAW08497.1    GEZM01053022    JAV74219.1    KK113281    KFM59799.1    NNAY01003095    OXU19992.1    GGMR01016905    MBY29524.1    GGMS01017365    MBY86568.1    GGFL01004957    MBW69135.1    GGMR01012676    MBY25295.1    GFXV01000908    MBW12713.1    GGFL01005012    MBW69190.1    GFTR01008246    JAW08180.1    KK115285    KFM64681.1    GFTR01008260    JAW08166.1    NEVH01002556    PNF42024.1    GGMS01002992    MBY72195.1    GBBI01004571    JAC14141.1    GGMS01006655    MBY75858.1    AY060438    AAL25477.1    GFXV01002840    MBW14645.1    GGMR01012305    MBY24924.1    GFTR01008257    JAW08169.1    GGMR01016297    MBY28916.1    NEVH01016302    PNF25823.1    RSAL01000708    RVE41206.1    GGMS01002955    MBY72158.1    GGMR01000676    MBY13295.1    GFTR01008151    JAW08275.1    GEZM01021881    JAV88842.1    KF280391    AIE77315.1    GGMR01003407    MBY16026.1    ABLF02041861    ABLF02016634    GDHC01018248    JAQ00381.1    GGMR01011511    MBY24130.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000054359    UP000235965    + More
UP000215335    UP000283053   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   K7IN67   V5GNJ2   A0A139WA11   A0A023EYS8   A0A2S2QEE0   A0A1Y1K0C8   J9LC21   A0A2S2PPK8   A0A2S2PEZ9   X1WNI2   V5GNF3   A0A2S2NJB5   A0A224XB44   X1WLB2   A0A224X6Q4   X1WZH0   A0A1B6C2V8   X1WVL6   J9KLB1   J9KPF1   A0A087UCW3   A0A2S2P6S3   A0A2S2NCK2   A0A2J7RE85   J9JS95   A0A224XF24   A0A2S2N6Q7   J9LFC9   A0A2J7QR37   A0A2S2NPT6   A0A2J7QY69   A0A2J7PBY3   A0A2J7PU96   A0A2S2PA10   J9M522   A0A2J7R7D0   A0A087U3K8   A0A2S2Q2R8   A0A224XI99   A0A224X6S1   A0A224X6T4   A0A224X6U5   A0A224X7Z3   A0A1Y1LKN6   A0A087T3W0   A0A232ENU1   A0A2S2PJG2   A0A2S2R9D4   A0A2M4CV52   A0A2S2P7B2   A0A2H8TF37   A0A2M4CV42   A0A224XIB0   A0A087THU2   A0A224X6W2   A0A2J7RMG0   A0A2S2Q383   A0A023EZE6   A0A2S2QDN9   Q95SX7   A0A2H8TKI9   A0A2S2P698   A0A224XJI0   A0A2S2PJ52   A0A2J7QB68   A0A3S2NJ07   A0A2S2Q352   A0A2S2N814   A0A224X746   A0A1Y1MT28   A0A0H3UA66   A0A2S2NGV8   J9LYS0   X1WXE6   A0A146KV64   A0A2S2P3X8  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

617

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.26204

Exp number, first 60 AAs:

0.0546

Total prob of N-in:

0.03708

outside

1  -  617

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain