Gene

KWMTBOMO10414  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007078

Annotation

PREDICTED:_zinc_finger_protein_583-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr17(+):10505424-10515178      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.88

CDS

ATGTTATCAAAATTTAATAAGGAATCATATCAACCTTATTCATTTGGCGAAGAAGAGAGAAGCAGCAGCAGTAGTGATCTATGGCAGCAGTTTGACGGGAAAAAATCTCTACAATTATCAAAAGAAATGATATGCAGGGTATGTGCAAGAAACGGTTGTACTCCATTAACTGAAAAGTTAAACAGTTATGATATTATTAGTGCCATTCGGAGCATTGCCAATATAACGATTGATTTAGATGATTCTTTGCCTAAGTATATATGTACTGAATGCTTAGATATGTTAAAAGTTGCCTTAAATTTCAAAACTAACTGTGAAACAGCTGATAAAAAGTTTAGGAAATTATTGAACCCCATGGGTAACCCAGCTTTCTATTCATATCCGTATTCCAAGAATGATTTTCAATTAATTTTACATAAGATGAAAACTAAACAGCTGAAGATTGCACAGGAAAAAGAGAAGCTTCGTATGAAGAGGGAAAAATCAATAAACAAAAAAATGCCCAAAGTCAAACAATTCAAATGTTCCCCCTGTGATGTGGTTTTCTCTACAAAAGAAAAATTGATGGTTCATCGTCGCGAGAGACAGTGTATGAGACGTGCATGTGACGTGTGCGGCCAGCTTGTTCTCAGTATATCGCATCACATGCGTCAGATACACAAACAGACGGTGCCTCATAAGTGTCCGACTTGCAACAAAGAGTTTTCAATATTGGCAAGACTCAAAAATCACATGATGATCCACACAAACACATTCAATTTCTTCTGTGATTTGTGTCCGTACAAATGCAAATACAAGTATTATCTGGTGCTGCATATGCGCACCCACACCGGCGAGAAACCTTACAAGTGTACACAGTGCAGCGCTACTTTCGTAAATCCTTCGAATCTCAACAAACATAAATTAACACATCAAGAAAAGCAGTATAAGTGCAAAATGTGCGAGAAAGCTTTCCGTACTAATTCCGCGCTGAGGCAACACCGCGAGGCGGCCCATCTCAACATCAAGCACCCTTGCAATCTGTGCGGAAGGGACTTCTGTTACAAGTCGGATTTGCGCAAACACGAGATACGCAGCCACAACCGCGCGAAGCGGGACTACGTGGGCGGCGAGCCCGCCTACAAGCAGTGGGAGCGCATGCAGAAGGACGACCCCGCTGACGTCACCAAGTGGCGCTCCGACGACGCCTCCCTCGTCCAAGGGGCCTACATCGAACCGCCCAAGCAGTTTGTACATACGAACAACGGAATGTACTTCTCGGACGTGTCCGGCCTGATACAACACCAGCCTCAAATGGTTCAACAACAAACTGTGGAAATAATACTGCCCGAACTTAATTTGAAAAAGGACGAAGTGACTATATATGAAACCGATCAAGGAATAGGGTATTTTTAA

Protein

MLSKFNKESYQPYSFGEEERSSSSSDLWQQFDGKKSLQLSKEMICRVCARNGCTPLTEKLNSYDIISAIRSIANITIDLDDSLPKYICTECLDMLKVALNFKTNCETADKKFRKLLNPMGNPAFYSYPYSKNDFQLILHKMKTKQLKIAQEKEKLRMKREKSINKKMPKVKQFKCSPCDVVFSTKEKLMVHRRERQCMRRACDVCGQLVLSISHHMRQIHKQTVPHKCPTCNKEFSILARLKNHMMIHTNTFNFFCDLCPYKCKYKYYLVLHMRTHTGEKPYKCTQCSATFVNPSNLNKHKLTHQEKQYKCKMCEKAFRTNSALRQHREAAHLNIKHPCNLCGRDFCYKSDLRKHEIRSHNRAKRDYVGGEPAYKQWERMQKDDPADVTKWRSDDASLVQGAYIEPPKQFVHTNNGMYFSDVSGLIQHQPQMVQQQTVEIILPELNLKKDEVTIYETDQGIGYF

Uniprot

H9JC33   A0A1E1WB12   A0A2H1VBX8   A0A194PJ02   A0A194QUX4   A0A2H1W341   + More
A0A194RP61   A0A0L7LRQ9   H9JMG1   A0A194PK55   S4PGP2   A0A2A4JER5   A0A194RQM6   H9JMG6   A0A0L7KN53   A0A1E1W6T3   A0A2A4IYH1   A0A194PJV7   A0A2H1WH54   A0A2A4JFN6   A0A212EYL8   A0A1Y1N8Z0   A0A1Y1NC21   A0A2A4J6N3   D6WRY2   A0A1B6DMJ5   A0A1Y1M1E1   D2A207   A0A0T6B4K0  

Pubmed

19121390    26354079    26227816    23622113    22118469    28004739    + More
18362917    19820115   

EMBL

BABH01014810    GDQN01006898    JAT84156.1    ODYU01001731    SOQ38327.1    KQ459603    + More
KPI93028.1    KQ461137    KPJ08780.1    ODYU01005946    SOQ47366.1    KQ459875    KPJ19633.1    JTDY01000233    KOB78143.1    BABH01016863    KQ459601    KPI93702.1    GAIX01003572    JAA88988.1    NWSH01001646    PCG70575.1    KPJ19615.1    BABH01016826    JTDY01008160    KOB64707.1    GDQN01008348    JAT82706.1    NWSH01005491    PCG64163.1    KPI93716.1    ODYU01008528    SOQ52212.1    PCG70576.1    AGBW02011486    OWR46570.1    GEZM01009670    JAV94414.1    GEZM01009666    JAV94420.1    NWSH01002900    PCG67338.1    KQ971351    EFA06599.2    GEDC01010458    JAS26840.1    GEZM01042733    JAV79674.1    KQ971338    EFA02716.1    LJIG01009821    KRT82313.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000037510    UP000218220    UP000007151    + More
UP000007266   

PRIDE

H9JC33    H9JMG1    H9JMG6   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JC33   A0A1E1WB12   A0A2H1VBX8   A0A194PJ02   A0A194QUX4   A0A2H1W341   + More
A0A194RP61   A0A0L7LRQ9   H9JMG1   A0A194PK55   S4PGP2   A0A2A4JER5   A0A194RQM6   H9JMG6   A0A0L7KN53   A0A1E1W6T3   A0A2A4IYH1   A0A194PJV7   A0A2H1WH54   A0A2A4JFN6   A0A212EYL8   A0A1Y1N8Z0   A0A1Y1NC21   A0A2A4J6N3   D6WRY2   A0A1B6DMJ5   A0A1Y1M1E1   D2A207   A0A0T6B4K0  

PDB

5WJQ     E-value=1.69269e-21,     Score=254

KEGG

101741031    no KO assigned | (RefSeq) zinc finger protein 583-like

GO

GO:0003676   GO:0005634   GO:0008270   GO:0003700   GO:0003677   GO:0006355   GO:0046872   GO:0006415   GO:0016021   GO:0006418   GO:0003723   GO:0003824  

Length:

464

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00152

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.00399

outside

1  -  464

 

 

Pi

162.7325

Theta

146.272342

Tajima's D

-0.542793

CLR

0.581413

CSRT

0.236538173091345

Interpretation

Uncertain