Gene

KWMTBOMO10151  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005634

Annotation

PREDICTED:_protein_shuttle_craft_[Bombyx_mori]

Location

Bomo_Chr17(-):3118425-3119403      View in EpiBrowser

Full name

Protein shuttle craft      

Transcription factor

zf-NF-X1

Location in the cell

Extracellular   Reliability : 2.664

CDS

ATGTGCAGCAGCAAGCTACCGCAAGTGTGCGGGCGTCCTTGCCAACGCATGCTACAGTGCGGCGTACACAAATGCATGAAGGAATGCCACGAGGGTCCCTGTGAAGACTGCACCGAGTCTGTTACACAAGTGTGCCATTGCCCGCTGGCGAAGACTCGTGAGGTCCCATGCCGCGTGGAGTCGTCGTGGTCGTGCGGCGGCGCGTGCGGGCGCGTGCTGTCGTGCGGCGCGCACGTGTGCCGGAGCACGTGCCACGAGCCCCCCTGCCCCCCCTGCGACCTGCTGCCTGCCGCGCTCATCACATGTCCGTGCGGGAAGACTAGGTTAGTGTTATAA

Protein

MCSSKLPQVCGRPCQRMLQCGVHKCMKECHEGPCEDCTESVTQVCHCPLAKTREVPCRVESSWSCGGACGRVLSCGAHVCRSTCHEPPCPPCDLLPAALITCPCGKTRLVL

Similarity

Belongs to the NFX1 family.

Keywords

Alternative splicing   Complete proteome   DNA-binding   Metal-binding   Nucleus   Phosphoprotein   Reference proteome   Repeat   RNA-binding   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Protein shuttle craft
splice variant  In isoform B.

Uniprot

H9J7Z2   A0A2A4K355   A0A2A4K2T6   A0A194QGR9   A0A194QXJ0   L7X1P9   + More
A0A3S2LJM5   A0A2H1V9F9   A0A212EP74   D0AB98   E9AVJ1   A0A3B3HQ34   A0A3P9KF86   A0A3B3HBV7   A0A3P9KFR6   E9BFL4   A0A3P9LYK9   A0A3B3H9U3   E9AGY6   A0A3S5H7A4   T1IRV0   A0A139WHD1   D6WMN1   Q4QBY8   A0A2J7QGA5   A0A2J7QGB1   E9H0P6   A0A3R7MD54   E8NH79   P40798-2   A0A061IS94   M9PDG3   M9PD57   P40798   B4MZE5   V9IHK4   A0A3P9J2S4   A0A2V2US01   Q4D928   A0A026WYJ9   A0A1X0NUI9   V5BFS7   A0A2V2UNA9   A0A2V2WLN1   Q4E1D9   K2LTG1   A0A182MHE8   V5GY42   B3MM96   A0A0P5KGC1   A0A0P5VH86   A0A0N8E1S9   A0A0P5KFL6   A0A3P3Z6Q5   A4HC58   A0A0P5U8W2   A0A088S9I8   A0A0P5PEI5   A0A3B3CWX9   B4NYD7   Q29P77   B4GK89   A0A1Y1JZ76   A0A0P5YM02   A0A1Y2CMK2   A0A3B3B700   B4KLB0   A0A0P5LKS5   A0A0K9PAU4   A0A0L0CJR7   A0A0P5B1I7   A0A3L6PGY4   A0A0P5QU35   A0A0N0VFZ7   A0A1W4WC55   A0A0N4UW62   A0A0P4ZYX1   A0A2R5LJK7   A0A0P5S2J5   A0A0P5FMM2   A0A0P5XCR0   A0A0P5XSZ8   B4HXM6   A0A0P5Q5B7   D8LYV5   B3N5P4   B4Q602   A0A2P8Z3T6   A0A0L7RDI2   A0A0N8DCJ5   A0A0P5AUP1   A0A0P5A3Q8   A0A0N8EQ75   A0A0P5SWI5   K3XV33   A0A0J9R2N5   A0A162CCJ7   A0A0P5A851   A0A0P5DJZ2  

Pubmed

19121390    26354079    23674305    22118469    22038252    17554307    + More
22038251    17572675    30409989    18362917    19820115    16020728    21292972    30355302    8524296    10471707    10731132    12537572    10731138    18327897    12537568    12537573    12537574    16110336    17569856    17569867    17994087    29708484    16020725    24508170    24482508    23035642    25707621    29451363    17550304    15632085    28004739    26814964    26108605    30683860    29403074    22580951    22936249   

EMBL

BABH01020191    BABH01020192    NWSH01000227    PCG78213.1    PCG78214.1    KQ459232    + More
KPJ02641.1    KQ461155    KPJ08291.1    KC469893    AGC92703.2    RSAL01000090    RVE48091.1    ODYU01001380    SOQ37468.1    AGBW02013517    OWR43279.1    FP102340    CBH09293.1    FR799575    CBZ26973.1    FR799609    CBZ34040.1    FR796454    UINB01000022    CBZ08650.1    SUZ41696.1    CP029521    AYU78699.1    JH431388    KQ971343    KYB27326.1    EFA04758.2    FR796418    CAJ03782.1    NEVH01014379    PNF27625.1    PNF27624.1    GL732581    EFX74683.1    MKGL01000327    RNF00413.1    BT125955    ADX35934.1    U09306    AE014134    AF145679    AUPL01006715    ESL05628.1    AGB92995.1    AGB92996.1    CH963913    EDW77484.2    JR046058    AEY60122.1    PRFC01000577    PWU85996.1    AAHK01000795    EAN89027.1    KK107064    EZA60846.1    NBCO01000019    ORC87859.1    AYLP01000076    ESS64932.1    PRFA01000142    MKKV01000219    PWU85837.1    RNF12979.1    PRFC01000083    MKQG01002482    PWV09102.1    RNC44062.1    AAHK01000050    EAN98570.1    AHKC01022676    EKF26023.1    AXCM01000660    GALX01003148    JAB65318.1    CH902620    EDV31856.1    GDIQ01210183    JAK41542.1    GDIP01115026    JAL88688.1    GDIQ01070236    JAN24501.1    GDIQ01191536    JAK60189.1    LS997621    SYZ65832.1    FR798997    CAM45049.2    GDIP01116421    JAL87293.1    CP009391    AIN98301.1    GDIQ01135765    JAL15961.1    CM000157    EDW89773.1    CH379058    EAL34416.2    CH479184    EDW37055.1    GEZM01096724    JAV54622.1    GDIP01055985    JAM47730.1    MCGO01000012    ORY48177.1    CH933807    EDW11771.1    GDIQ01172193    JAK79532.1    LFYR01001054    KMZ65305.1    JRES01000305    KNC32491.1    GDIP01191112    JAJ32290.1    PQIB02000018    RLM56259.1    GDIQ01119112    JAL32614.1    LGTL01000006    KPA81944.1    UXUI01007208    VDD86277.1    GDIP01206262    JAJ17140.1    GGLE01005607    MBY09733.1    GDIQ01102271    JAL49455.1    GDIQ01254719    JAJ97005.1    GDIP01074037    JAM29678.1    GDIP01067825    JAM35890.1    CH480818    EDW51806.1    GDIQ01128831    JAL22895.1    FN668640    CBK20994.2    CH954177    EDV58003.1    CM000361    EDX05105.1    PYGN01000208    PSN51156.1    KQ414614    KOC68840.1    GDIP01047087    JAM56628.1    GDIP01208014    JAJ15388.1    GDIP01207964    JAJ15438.1    GDIQ01004668    JAN90069.1    GDIP01139280    JAL64434.1    AGNK02002331    CM003531    RCV21105.1    CM002910    KMY90343.1    LRGB01001005    KZS14152.1    GDIP01206263    JAJ17139.1    GDIP01158477    JAJ64925.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000007259    UP000001038    UP000265180    UP000008980    UP000008153    UP000274082    UP000007266    UP000000542    UP000235965    UP000000305    UP000000803    UP000007798    UP000265200    UP000002296    UP000053097    UP000192257    UP000075883    UP000007801    UP000007258    UP000261560    UP000002282    UP000001819    UP000008744    UP000193642    UP000009192    UP000036987    UP000037069    UP000275267    UP000192221    UP000038041    UP000274131    UP000001292    UP000008711    UP000000304    UP000245037    UP000053825    UP000004995    UP000076858   

PRIDE

H9J7Z2    E8NH79    P40798   

Pfam

PF01424   R3H        + More
PF01422   zf-NF-X1

Interpro

IPR034076   R3H_NF-X1        + More
IPR034078   NFX1_fam       
IPR001374   R3H_dom       
IPR019787   Znf_PHD-finger       
IPR036867   R3H_dom_sf       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001841   Znf_RING       
IPR000967   Znf_NFX1       
IPR011011   Znf_FYVE_PHD       

SUPFAM

SSF82708   SSF82708        + More
SSF57903   SSF57903       

Gene 3D

3.30.1370.50    

CDD

cd02643  R3H_NF-X1

ProteinModelPortal

H9J7Z2   A0A2A4K355   A0A2A4K2T6   A0A194QGR9   A0A194QXJ0   L7X1P9   + More
A0A3S2LJM5   A0A2H1V9F9   A0A212EP74   D0AB98   E9AVJ1   A0A3B3HQ34   A0A3P9KF86   A0A3B3HBV7   A0A3P9KFR6   E9BFL4   A0A3P9LYK9   A0A3B3H9U3   E9AGY6   A0A3S5H7A4   T1IRV0   A0A139WHD1   D6WMN1   Q4QBY8   A0A2J7QGA5   A0A2J7QGB1   E9H0P6   A0A3R7MD54   E8NH79   P40798-2   A0A061IS94   M9PDG3   M9PD57   P40798   B4MZE5   V9IHK4   A0A3P9J2S4   A0A2V2US01   Q4D928   A0A026WYJ9   A0A1X0NUI9   V5BFS7   A0A2V2UNA9   A0A2V2WLN1   Q4E1D9   K2LTG1   A0A182MHE8   V5GY42   B3MM96   A0A0P5KGC1   A0A0P5VH86   A0A0N8E1S9   A0A0P5KFL6   A0A3P3Z6Q5   A4HC58   A0A0P5U8W2   A0A088S9I8   A0A0P5PEI5   A0A3B3CWX9   B4NYD7   Q29P77   B4GK89   A0A1Y1JZ76   A0A0P5YM02   A0A1Y2CMK2   A0A3B3B700   B4KLB0   A0A0P5LKS5   A0A0K9PAU4   A0A0L0CJR7   A0A0P5B1I7   A0A3L6PGY4   A0A0P5QU35   A0A0N0VFZ7   A0A1W4WC55   A0A0N4UW62   A0A0P4ZYX1   A0A2R5LJK7   A0A0P5S2J5   A0A0P5FMM2   A0A0P5XCR0   A0A0P5XSZ8   B4HXM6   A0A0P5Q5B7   D8LYV5   B3N5P4   B4Q602   A0A2P8Z3T6   A0A0L7RDI2   A0A0N8DCJ5   A0A0P5AUP1   A0A0P5A3Q8   A0A0N8EQ75   A0A0P5SWI5   K3XV33   A0A0J9R2N5   A0A162CCJ7   A0A0P5A851   A0A0P5DJZ2  

KEGG

101741751    K12236 transcriptional repressor NF-X1 | (RefSeq) protein shuttle craft

GO

GO:0005634   GO:0003700   GO:0008270   GO:0003676   GO:0006355   GO:0000981   GO:0000122   GO:0000977   GO:0003723   GO:0003677   GO:0016021   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

PANTHER

PTHR12360  

Subcellular location

Nucleus  

Length:

111

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.23314

outside

1  -  111

 

 

Pi

133.108066

Theta

122.960012

Tajima's D

0.366195

CLR

0

CSRT

0.474076296185191

Interpretation

Uncertain