Silkworm Genome Informatics Database

Gene

KWMTBOMO09977

Pre Gene Modal

BGIBMGA013199

Annotation

PREDICTED:_homeobox_protein_cut_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr16(+):13822922-14001590 View in EpiBrowser

Full name

Homeobox protein cut-like + More
DNA-binding protein SATB

Alternative Name

Special AT-rich sequence-binding protein

Transcription factor

CUT

Location in the cell

Nuclear Reliability : 3.984

CDS

ATGCTTCGATCGTTGGACCTCGGCGCCGGCGAGCGGTCGTGCGACAGGTCCTTAGAGCGGAAGCCGGCGCCGCCCCGGTCGCCGAGCGCCGCGCCCACACTGGACGAGCGGAGCCCCGCCGAGCGCGAGCGGAGCGCCGAGCGACGAGACGCAGGTGCCGAGGAGTGGCCCAGCACCCCGCCGCCGCTCAACAACAACACGACCCATCACAACAACAACGGGCCCACGCCGCTGCCCCTCCCGCCGCCCAGCCCCTTCAGGTTTGAGGAGCACCGCCCCTATCGGTTCGCGGAGGACATGGGTCCGCTGCCGCCGGGGGCGCTGGTGGGTCGGCTGGGCGACTCACTGATCCCCAAGGGCGACCCCATGGAGGCGCGGCTGCAGGAGATGCTCCGGTACAACATGGACAAGTACGCGAACAGCAACCTGGACACGCTGCACATCAGCCGCAAAGTGCGGGAGCTGCTGTCCGTGCATAACATCGGCCAGAGACTGTTCGCCAAGTACGTGCTGGGCCTCTCGCAGGGCACGGTGTCCGAGCTGCTCTCGAAGCCGAAGCCCTGGGACAAGCTGACGGAGAAGGGCCGCGACTCGTACAGGAAGATGCACGCGTGGGCGTGCGACGAGGCCGCCATCATGCTCCTCAAGTCTCTCATTCCTAAAAAAGTAGGGACGAAAGATGGCACTCCAGGTCCCGGCTTCGGTAGATCAGAAGGAGAAGGCGACGACCGTCTTGCTCACATGCTCAGCGAAGCTTCACACCTTATGAAAACCCCATCAGGACACCACAATAATGATGATTCTAGGAGTAATGAGGATTCCAGCTCACCAAGGACCCAGTGCCTCTCACCGTTTTCAAATAAGGATTCGAGTCAAAACAGAAGACTTAAGAAGTACGAAAACGATGACATTCCTCCGGATAAAGTCGTGCGCATCTACCATGAGGAACTGGCTAAGATCATGACCAGGCGGGTTGAAGACATGCGCCACAGCCGAGATAGCTTCCCTGGCAGCGGTATGGCTCCTCACATGGAGAGACCGCCCGAGGACATTCGCATGGCGCTCGAGGCCTACCACAGGGAGCTGGCTAAGCTCCAGCCGGGGACCAACATTCCCAATCTCCACAACTTGCCAGGAATGCCGCCCTTTCCGAACCTGCTCGCCCTGCAGCAACAGGCAATACAGCAAGCTCAAAACCAACATATGAATGGCTCGGGAGCCATTCAAGATTTGTCTCTTCCGAAAGACAAAACTATGAAAATGAACGGAATGACTGATAGTGATAAGGACAAGCCATTAGATGCCGAAGAGGCGATACGCCACGCAGGTAGTGCGTTCTCATTGGTCCGACCTAAGCTAGAGCCCGGACAGCAGTCCACGGGGTCGTCTGCTTCCAGCCCACTAGGGAATGCTATTCTACCACCCGCGATCACGCCCAACGAGGACTTTACTAGCTCAGCAGCGGCAAGCCCCTTGCAGAGAATGGCCTCAATAACTAATAGCTTAATATCGCAACCAACAAATCCCCCGCACCATCCGCCGCCACAAAGATCCATGAAAGCTGTACTACCGCCGATCACCCAACAACAGTTTGATCTCTTTAACAACTTGAACACGGAGGAGATAGTCCGACGGGTCAAGGAAGCATTAAGCCAGTACTCCATAAGCCAACGTTTGTTTGGGGAGTCAGTTCTTGGTCTCTCTCAAGGATCGGTCAGCGATTTGTTAGCGAGACCGAAGCCCTGGCATATGCTTACGCAAAAGGGAAGGGAGCCATTTATCAGGATGAAGATGTTCTTAGAAGACGATAATGCTGTTCACAAGCTGGTTGCGTCACAGTACAAGATTGCACCCGAGAAACTGATGAGAACCGGAAACTACAGCGGAGCACCTCCTTGTCCGCCAAACATGAACAAACCGATGCCGCCGACGCAAAAAATGATCTCAGACGCCACGTCTCTACTGAGCAAAATGCAACAAGAACAACTGTTGGGTCCGGGACACCTGGCACATCTCGGACAACCCACGCCGCTGCTGCTCACCCCTCCTGGATTCCCTCCTCACCACGCCGTCACTCTGCCACCGCAGCACCACGACAACAACAACAAGGAAAGGAAACCTCCGCCTCCTCCACAGCCACATCACCAGCCTCCAGTGATGCGGACCCTGCACCAACACATGACACCCAGCGTATACGAAATGGCCGCTCTCACGCAAGATCTCGACACGCAGACCATCACGACCAAAATAAAAGAAGCTTTGCTTGCGAATAATATCGGACAAAAGATATTTGGTGAAGCAGTTCTCGGCCTCTCGCAGGGATCGGTCAGCGAATTATTATCAAAACCTAAACCTTGGCACATGTTAAGCATAAAAGGTAGGGAGCCCTTCATTCGGATGCAGCTTTGGCTGAGCGACGCTCACAACATCGACCGCCTTCAGGCGCTCAAGAACGAACGACGCGAAGCGAACAAACGGCGGCGGTCGAGCGGTCCCGGACAGGACAACTCGTCCGACACCTCCTCCAACGACACCTCTGAGTTCTACCACTCCAGTTCGCCCGGACCCAACTCTGGAGCTCCCTGTGCTAAGAAACAAAGAGTCTTGTTCTCGGAAGAGCAGAAAGAAGCGCTGAGATTAGCTTTTGCCCTTGATCCGTATCCCAATATGCCCACAATAGAATTCCTGGCTGCCGAGTTAGGGCTATCCACCCGTACCATTACGAACTGGTTCCACAATCATCGTATGAGGCTCAAACAGCAGGCGCCCCACGGGCTACCGTCAGAGCCGCCGGCACGAGAACAGTCCTCGGCGCCTTTCGACCCCGTTCAGTTTAGGCTACTTCTAAATCAGAGACTGCTGGAACTACAGAAGGAGAGGATGGGCCTGGCCGGGGTTCCGCTCCCCTATCCTCCGTACTTTGCAGCGAACTCGAACCTCGCCGCGCTGATTGGACGCGGGCTCGTTGTTCCCGAAGAAGGCAAAGACACAGCCGGTGGACTCGACCTCACGATGCCGTTGAAACGCGAACCTGATGGAGACGACTTCGAAGACGACGACGTCGAGAGCAACCTCGGCTCCGAGGACTCGCTAGACGACGAATCTAAGACTGAACCGAAAGCTTCCTCGACGCCCCAGGGTCGATCCAGCAGACGGAAGCCTGCGGCGCCGCAGTGGGTCAACCCGGACTGGCAGGACGAGAAACCGCGCAACCCCGATGAAGTCATCATCAACGGCGTCTGCGTCATGCGCGGCGACGATTTCCGGCGCGACTCCGAGGAGACGGTGCGCGTGGAGCCCTCCCCCGCGCCCCCTTCGCTCGCGCCCCCTCCCTCGCTCGTGGCGGCCCCCCCGCACCCCGCGCCCTCGCCGCCGCGCCTGCTGCACGACGACAAGATCAAGTCGGAGGCCGAGGACGACCGGTGGGAGTACTGA

Protein

MLRSLDLGAGERSCDRSLERKPAPPRSPSAAPTLDERSPAERERSAERRDAGAEEWPSTPPPLNNNTTHHNNNGPTPLPLPPPSPFRFEEHRPYRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNMDKYANSNLDTLHISRKVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAIMLLKSLIPKKVGTKDGTPGPGFGRSEGEGDDRLAHMLSEASHLMKTPSGHHNNDDSRSNEDSSSPRTQCLSPFSNKDSSQNRRLKKYENDDIPPDKVVRIYHEELAKIMTRRVEDMRHSRDSFPGSGMAPHMERPPEDIRMALEAYHRELAKLQPGTNIPNLHNLPGMPPFPNLLALQQQAIQQAQNQHMNGSGAIQDLSLPKDKTMKMNGMTDSDKDKPLDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNEDFTSSAAASPLQRMASITNSLISQPTNPPHHPPPQRSMKAVLPPITQQQFDLFNNLNTEEIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMNKPMPPTQKMISDATSLLSKMQQEQLLGPGHLAHLGQPTPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHQPPVMRTLHQHMTPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPNSGAPCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLAAELGLSTRTITNWFHNHRMRLKQQAPHGLPSEPPAREQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLVVPEEGKDTAGGLDLTMPLKREPDGDDFEDDDVESNLGSEDSLDDESKTEPKASSTPQGRSSRRKPAAPQWVNPDWQDEKPRNPDEVIINGVCVMRGDDFRRDSEETVRVEPSPAPPSLAPPPSLVAAPPHPAPSPPRLLHDDKIKSEAEDDRWEY

Similarity

Belongs to the CUT homeobox family.

Uniprot

A0A0L7LRQ6 H9JUI6 A0A437BLX7 A0A212F2A0 A0A2H1V8E3 A0A0N1PGT2 + More
A0A139WFW7 D2A6H5 A0A139WG16 A0A1W4WLK8 A0A1W4WLI7 A0A1W4WXK9 A0A1W4WWA8 A0A336LRN4 A0A336LM64 T1I560 A0A0T6B6B2 A0A146L1B0 N6TBM0 U4U422

Pubmed

26227816 19121390 22118469 26354079 18362917 19820115 + More
26823975 23537049

EMBL

JTDY01000243 KOB78089.1 BABH01022572 BABH01022573 RSAL01000036 RVE51248.1 + More
AGBW02010783 OWR47856.1 ODYU01001198 SOQ37079.1 KQ460655 KPJ12930.1 KQ971348 KYB26863.1 EFA05512.2 KYB26864.1 UFQT01000054 SSX19077.1 SSX19076.1 ACPB03002473 LJIG01009599 KRT82757.1 GDHC01016286 JAQ02343.1 APGK01036722 APGK01036723 APGK01036724 APGK01036725 APGK01036726 APGK01036727 KB740941 ENN77669.1 KB632001 ERL87802.1

Proteomes

UP000037510 UP000005204 UP000283053 UP000007151 UP000053240 UP000007266 + More
UP000192223 UP000015103 UP000019118 UP000030742

PRIDE

H9JUI6

Pfam

PF00046 Homeodomain + More
PF02376 CUT

Interpro

IPR001356   Homeobox_dom        + More
IPR003350   CUT_dom
IPR017970   Homeobox_CS
IPR009057   Homeobox-like_sf
IPR010982   Lambda_DNA-bd_dom_sf

SUPFAM

SSF46689 SSF46689 + More
SSF47413 SSF47413

CDD

cd00086 homeodomain

ProteinModelPortal

A0A0L7LRQ6 H9JUI6 A0A437BLX7 A0A212F2A0 A0A2H1V8E3 A0A0N1PGT2 + More
A0A139WFW7 D2A6H5 A0A139WG16 A0A1W4WLK8 A0A1W4WLI7 A0A1W4WXK9 A0A1W4WWA8 A0A336LRN4 A0A336LM64 T1I560 A0A0T6B6B2 A0A146L1B0 N6TBM0 U4U422

PDB

1WH8 E-value=2.54655e-20, Score=248

KEGG

101736914 K09313 homeobox protein cut-like | (RefSeq) homeobox protein cut

GO

GO:0005634 GO:0043565 GO:0006355 GO:0000122 GO:0000977 GO:0000139 GO:0048193 GO:0003677 GO:0006508 GO:0008233 GO:0004672 GO:0030677 GO:0016155 GO:0003824

Subcellular location

Nucleus

Length:

1144

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01032

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1144

Pi

249.407282

Theta

189.918946

Tajima's D

0.99591

CLR

0.284825

CSRT

0.655517224138793

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics