Silkworm Genome Informatics Database

Gene

KWMTBOMO09956

Pre Gene Modal

BGIBMGA013185

Annotation

p53_[Bombyx_mori]

Location

Bomo_Chr16(+):12763663-12773537 View in EpiBrowser

Transcription factor

P53

Location in the cell

Nuclear Reliability : 4.004

CDS

ATGAAACACGAAATCATGACATCTCTTGAGGTTGCCACATGCGAAGATGACATAGTGAACATTGATTTGAACACTATACCGGATGAAGCATTGTTTCAAGGGGGGATACACGATCAAGTTGACATTGGAGTGCTAGATGACATTCCGTACATAATCAGTGATGTGTCTAACAATTCAAACAATTCCTTTCCTCTTGGACCCCGAGGACCGCCGCCTCGCAAAGACGATCCCGGGCAATACAACTTCAGCGTCGAAATCCACAGCAAGGATACACACAAGAAGAAGTTCTTGTTCTCGCACAAGCTGAACCGGATCTACGTGAACATGGAGACCGACTTCGCTGTCCAGTTCAACTGGGAGCTGGTGGACCTCGCCGTGACGCAGATGTACGTGCGCGCCACCGTCGTCTTCGAGGACGAGTCCCAGGCCGAGAAGAGAGTCGAGAGATGCATCCAGCACAAACTCTGCAGTTCCGATAAAGGCCAGGACCGCGTCGTGTCGGAGAACGTGCTGCGCTCGTCGCGGCCCCTGGGCACCAACGACGTGCAGTACTGCGGCCACCCGGACGACCCCGACTACTGGTACTCCGTGCTGGTGCAGCTGCCCAAGCCGGGCCGGGAGCCTTGCACGCACGCCTTCAAGTTCGTCTGCAAGAACTCCTGCAGCACCGGCATCAACCGCCGCTCCATAGCCGTCATCTTCACCCTGGAGAGCGCCTCCGGCTCGGTGCTGGGGCGGCAGACGGTGGGCGCGCGGGTGTGCTCGTGCACGGCGCGCGACATGTGCAAGGACGAGGAGGCGGAGGGCGCGCGCGCGGCCAGGAAGCGGCCCCGGCCCGCGCAGTCGCGCCTCCTCAAGAAGATCAAGCTGGAGACCGTCGGCGACCTGCCCGTCGACGCCGAGACCCTCACCCTGCCGCCGCTGGAAATTATCGGAGCCAAAACGGTGAAGACCGGCCTGGAAGTGATGCTGCGCATGATGGAGCAGGCGGCCCACTTCCACAAGCACGACCAGCTCGCCGCCGACGGCTACCAGCGCCGCGTCGCCAGCCTCCGACAGTACATCGACACGCTCGACGCCAAACCGACGAAACATGCCAGCGAATAG

Protein

MKHEIMTSLEVATCEDDIVNIDLNTIPDEALFQGGIHDQVDIGVLDDIPYIISDVSNNSNNSFPLGPRGPPPRKDDPGQYNFSVEIHSKDTHKKKFLFSHKLNRIYVNMETDFAVQFNWELVDLAVTQMYVRATVVFEDESQAEKRVERCIQHKLCSSDKGQDRVVSENVLRSSRPLGTNDVQYCGHPDDPDYWYSVLVQLPKPGREPCTHAFKFVCKNSCSTGINRRSIAVIFTLESASGSVLGRQTVGARVCSCTARDMCKDEEAEGARAARKRPRPAQSRLLKKIKLETVGDLPVDAETLTLPPLEIIGAKTVKTGLEVMLRMMEQAAHFHKHDQLAADGYQRRVASLRQYIDTLDAKPTKHASE

Uniprot

F4ZEC8 D4AIA2 F4ZEC9 A0A2H1V2J4 A0A0N0PCE7 A0A437B4Y2 + More
A0A0N1PE05 A0A212FJ15 W8QTK4

Pubmed

21497653 26354079 22118469

EMBL

HM773025 AEC04308.1 AB550909 BAI82609.1 HM773026 AEC04309.1 + More
ODYU01000380 SOQ35067.1 KQ460655 KPJ12955.1 RSAL01000158 RVE45542.1 KQ459388 KPJ01146.1 AGBW02008320 OWR53721.1 KF991220 AHL68669.1

Proteomes

UP000053240 UP000283053 UP000053268 UP000007151

PRIDE

F4ZEC8 D4AIA2 F4ZEC9

Pfam

PF00870 P53

Interpro

IPR008967   p53-like_TF_DNA-bd        + More
IPR012346   p53/RUNT-type_TF_DNA-bd_sf
IPR011615   p53_DNA-bd
IPR002117   p53_tumour_suppressor

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.720

CDD

cd08367 P53

ProteinModelPortal

F4ZEC8 D4AIA2 F4ZEC9 A0A2H1V2J4 A0A0N0PCE7 A0A437B4Y2 + More
A0A0N1PE05 A0A212FJ15 W8QTK4

PDB

3Q01 E-value=1.08456e-16, Score=211

KEGG

100384887 K04451 tumor protein p53 | (RefSeq) p53; p53 tumor suppressor homolog

PATHWAY

04137 Mitophagy - animal - Bombyx mori (domestic silkworm)
04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634 GO:0044212 GO:0003700 GO:0006915 GO:0003677 GO:0006355 GO:0006468 GO:0004672 GO:0030677 GO:0016155 GO:0003824

PANTHER

PTHR11447

Length:

368

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00328

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01071

outside

1 - 368

Pi

249.200485

Theta

152.593854

Tajima's D

2.117287

CLR

1.277606

CSRT

0.899055047247638

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics