HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.4	0.0	0.024	1.5	3	23	27	47
2	4.5	0.7	0.87	52	2	23	59	81
3	9.6	2.3	0.021	1.3	3	23	88	108
4	8.6	0.1	0.042	2.5	1	21	176	196
5	2.3	0.1	4.3	2.5e+02	3	20	205	222
6	8.0	0.8	0.066	3.9	2	23	262	284
7	6.5	2.9	0.21	12	2	23	292	314
8	12.0	3.8	0.0036	0.21	1	23	323	346
9	16.0	2.2	0.00019	0.011	1	23	352	375
10	12.3	4.7	0.0028	0.17	2	23	527	548
11	2.9	0.2	2.8	1.7e+02	5	23	558	577

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.024
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C++C+  F ++ +Lk+H+++H
  KWMTBOMO06269 27 CSICNAEFLDPGDLKQHLKVH 47
                   *******************99 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.87
                   EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirt.H 23
                   +C+ C  ++ + +++  Hir  H
  KWMTBOMO06269 59 TCDFCECKYADVEEYAYHIRDsH 81
                   7*******************888 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.021
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C+++F +   +k+H r+H
  KWMTBOMO06269  88 CQLCSRVFIDFNKYKQHTRKH 108
                    9*******************9 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.042
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y C++C+++ ++ +++ +H++
  KWMTBOMO06269 176 YSCTVCDYKTNDLDLYIQHLQ 196
                    89*****************86 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 4.3
                    ETTTTEEESSHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHi 20 
                    C+ Cg ++k +  L +H+
  KWMTBOMO06269 205 CDSCGNVYKLRRGLFSHL 222
                    99***************7 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.066
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+  F +  +L+ H+ + H
  KWMTBOMO06269 262 KCTMCNIIFHSVNDLTEHQISrH 284
                    8******************9988 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.21
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C + +  k  L++H+ + H
  KWMTBOMO06269 292 TCKFCYRQCVGKVALMKHMTRvH 314
                    7******************9999 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.0036
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C dC+ +Fk++  L +H  + H
  KWMTBOMO06269 323 YECVDCKTVFKHPQKLFSHFYMkH 346
                    99*****************87766 PP

  == domain 9  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+k+Fk +  ++ Hi+  H
  KWMTBOMO06269 352 YTCKICNKKFKIRKKFTIHIKLdH 375
                    9********************999 PP

  == domain 10  score: 12.3 bits;  conditional E-value: 0.0028
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k + +k n+krH+  H
  KWMTBOMO06269 527 TCTKCNKYCYTKQNYKRHMALH 548
                    7******************999 PP

  == domain 11  score: 2.9 bits;  conditional E-value: 2.8
                    TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                    +C + F++ s Lk H  + H
  KWMTBOMO06269 558 KCAQIFNSVSKLKEHVEKeH 577
                    7999***********99988 PP