Silkworm Genome Informatics Database

Gene

KWMTBOMO09226

Pre Gene Modal

BGIBMGA003341

Annotation

PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(-):13652197-13657687 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.117

CDS

ATGAAAGTGAGAGAAAGAGACACGAACAAAGTCACTCCCTCCACTTTCAGTGCCAAATTTGTTCTAAGAAATTTAATTTTTTCCTTACGGAGACACGAAAAACAGCATTCACGTAAAGGAAGCGTTCAATGTAATAAGTGTGGAGGAAAATTTAGGGATGAAGTTCTACTGAAGCGTCATTTTAATTATGCTCATAAAGGTACATTTATTTGTGAGGAATGCGGCGCATCATTTAGCAGCAAACCGGCTCTTCGAACTCACTTGAAGATTCACAGACCTGAATCGGAGAGGCGATACAAGTGCAGCGTTAATGGATGTCGTAAGACTTTCAATTTTCCACATCATTTAAAGCACCATGAGCTGACGCACAAAAATGAGAAGCCGCACTTCTGTAGTATATGCGGGAAAGGTTTTATACAATCACATCACCTGAAAGCTCACCTCAGAACCCACGAGCCTGATAATTGGCTGTACTGCGATGTAACGAACTGCAAAAAGAAATTTGCTACCGATTATGCTAGGAAAAGACATCAGGAAACTCACAGAAGTAAATTGGAAATCATAACTACAGATACAAAATCTATAACCGAACCATTAGTTGAGGAGGAAAGTCTACAAACTACCTTATGCACGAATTGTGGTCAAATTGTATTCCAAATTTATTACAACGAACATGTAATTATGTGTAAAAGTAATTTTGATAACAATAAACCGGCATCTCAAAGTTTTTCTTCGGATAAAGAAGCTATTGATCACAGCGTTTCTGATGTAGACGTTATGGAAGACGTAAGTAGTTGTAAGACGATATTGGGCGGTTGTTTACTCGAGTCTGAAGGCCGAGAATGTTTATGTGAACAAATGAGCCGGAGAATTGGCGAGGGCTATGATGATCCAGCTCCCCAATCAGATGCGAATAGCTGGACAAAATCACTAGACCGCGAGAAAAACGTGAGCGAAAACTTCTGTGATGGCTGCGAATGTTCTAAAGTTGACGAAGTTAAAGATACGAAACTCAAAACTTGTTTACAAAACACGATTTCAACAACAATGACTGATTTAGAAAATAGAACTATTAAAGTAGTGAATGGAGCTATAAAAGTGCTTGATATATGCGATATAGTAATGCCAGAAGTAATGGATGCAAAGCAGACAAGTAGATTTGAAATCCCTAATAGTTGCAGGGAAATGCTTGGTGAATGTATAGTCAACGGAAGCGGCGAAGGCTGTTTATGTGCTCAAATGAAATTCGAACAGATAGCCGCAGAAGAAATAGCCAATATTACACCACAACCAAAAATTTAA

Protein

MKVRERDTNKVTPSTFSAKFVLRNLIFSLRRHEKQHSRKGSVQCNKCGGKFRDEVLLKRHFNYAHKGTFICEECGASFSSKPALRTHLKIHRPESERRYKCSVNGCRKTFNFPHHLKHHELTHKNEKPHFCSICGKGFIQSHHLKAHLRTHEPDNWLYCDVTNCKKKFATDYARKRHQETHRSKLEIITTDTKSITEPLVEEESLQTTLCTNCGQIVFQIYYNEHVIMCKSNFDNNKPASQSFSSDKEAIDHSVSDVDVMEDVSSCKTILGGCLLESEGRECLCEQMSRRIGEGYDDPAPQSDANSWTKSLDREKNVSENFCDGCECSKVDEVKDTKLKTCLQNTISTTMTDLENRTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGECIVNGSGEGCLCAQMKFEQIAAEEIANITPQPKI

Uniprot

H9J1F4 A0A2A4KAD4 A0A2H1V2Z1 S4NTR6 A0A194RJP3 A0A437B9I0 + More
A0A194PLF6

Pubmed

19121390 23622113 26354079

EMBL

BABH01023813 BABH01023814 NWSH01000012 PCG80874.1 ODYU01000428 SOQ35179.1 + More
GAIX01012126 JAA80434.1 KQ460106 KPJ17772.1 RSAL01000112 RVE47043.1 KQ459602 KPI93564.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000283053 UP000053268

PRIDE

H9J1F4

Pfam

PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR003604   Matrin/U1-like-C_Znf_C2H2

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J1F4 A0A2A4KAD4 A0A2H1V2Z1 S4NTR6 A0A194RJP3 A0A437B9I0 + More
A0A194PLF6

PDB

2I13 E-value=7.01271e-16, Score=205

KEGG

101745174 no KO assigned | (RefSeq) zinc finger protein 16-like

GO

GO:0003676 GO:0008270 GO:0046872 GO:0006355 GO:0046983 GO:0006260 GO:0008408 GO:0003677 GO:0016020 GO:0016876 GO:0043039

Length:

433

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00656999999999998

Exp number, first 60 AAs:

0.00477

Total prob of N-in:

0.06683

outside

1 - 433

Pi

155.939408

Theta

177.630758

Tajima's D

-0.742571

CLR

0.801865

CSRT

0.191540422978851

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree