SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09226
Pre Gene Modal
BGIBMGA003341
Annotation
PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.117
 

Sequence

CDS
ATGAAAGTGAGAGAAAGAGACACGAACAAAGTCACTCCCTCCACTTTCAGTGCCAAATTTGTTCTAAGAAATTTAATTTTTTCCTTACGGAGACACGAAAAACAGCATTCACGTAAAGGAAGCGTTCAATGTAATAAGTGTGGAGGAAAATTTAGGGATGAAGTTCTACTGAAGCGTCATTTTAATTATGCTCATAAAGGTACATTTATTTGTGAGGAATGCGGCGCATCATTTAGCAGCAAACCGGCTCTTCGAACTCACTTGAAGATTCACAGACCTGAATCGGAGAGGCGATACAAGTGCAGCGTTAATGGATGTCGTAAGACTTTCAATTTTCCACATCATTTAAAGCACCATGAGCTGACGCACAAAAATGAGAAGCCGCACTTCTGTAGTATATGCGGGAAAGGTTTTATACAATCACATCACCTGAAAGCTCACCTCAGAACCCACGAGCCTGATAATTGGCTGTACTGCGATGTAACGAACTGCAAAAAGAAATTTGCTACCGATTATGCTAGGAAAAGACATCAGGAAACTCACAGAAGTAAATTGGAAATCATAACTACAGATACAAAATCTATAACCGAACCATTAGTTGAGGAGGAAAGTCTACAAACTACCTTATGCACGAATTGTGGTCAAATTGTATTCCAAATTTATTACAACGAACATGTAATTATGTGTAAAAGTAATTTTGATAACAATAAACCGGCATCTCAAAGTTTTTCTTCGGATAAAGAAGCTATTGATCACAGCGTTTCTGATGTAGACGTTATGGAAGACGTAAGTAGTTGTAAGACGATATTGGGCGGTTGTTTACTCGAGTCTGAAGGCCGAGAATGTTTATGTGAACAAATGAGCCGGAGAATTGGCGAGGGCTATGATGATCCAGCTCCCCAATCAGATGCGAATAGCTGGACAAAATCACTAGACCGCGAGAAAAACGTGAGCGAAAACTTCTGTGATGGCTGCGAATGTTCTAAAGTTGACGAAGTTAAAGATACGAAACTCAAAACTTGTTTACAAAACACGATTTCAACAACAATGACTGATTTAGAAAATAGAACTATTAAAGTAGTGAATGGAGCTATAAAAGTGCTTGATATATGCGATATAGTAATGCCAGAAGTAATGGATGCAAAGCAGACAAGTAGATTTGAAATCCCTAATAGTTGCAGGGAAATGCTTGGTGAATGTATAGTCAACGGAAGCGGCGAAGGCTGTTTATGTGCTCAAATGAAATTCGAACAGATAGCCGCAGAAGAAATAGCCAATATTACACCACAACCAAAAATTTAA
Protein
MKVRERDTNKVTPSTFSAKFVLRNLIFSLRRHEKQHSRKGSVQCNKCGGKFRDEVLLKRHFNYAHKGTFICEECGASFSSKPALRTHLKIHRPESERRYKCSVNGCRKTFNFPHHLKHHELTHKNEKPHFCSICGKGFIQSHHLKAHLRTHEPDNWLYCDVTNCKKKFATDYARKRHQETHRSKLEIITTDTKSITEPLVEEESLQTTLCTNCGQIVFQIYYNEHVIMCKSNFDNNKPASQSFSSDKEAIDHSVSDVDVMEDVSSCKTILGGCLLESEGRECLCEQMSRRIGEGYDDPAPQSDANSWTKSLDREKNVSENFCDGCECSKVDEVKDTKLKTCLQNTISTTMTDLENRTIKVVNGAIKVLDICDIVMPEVMDAKQTSRFEIPNSCREMLGECIVNGSGEGCLCAQMKFEQIAAEEIANITPQPKI

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
SUPFAM
SSF57667   SSF57667       
PDB
2I13     E-value=7.01271e-16,     Score=205

Ontologies

Topology

Length:
433
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00656999999999998
Exp number, first 60 AAs:
0.00477
Total prob of N-in:
0.06683
outside
1  -  433
 
 

Population Genetic Test Statistics

Pi
155.939408
Theta
177.630758
Tajima's D
-0.742571
CLR
0.801865
CSRT
0.191540422978851
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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