Silkworm Genome Informatics Database

Gene

KWMTBOMO08827

Pre Gene Modal

BGIBMGA007864

Annotation

PREDICTED:_zinc_finger_protein_GLIS3-like_[Amyelois_transitella]

Location

Bomo_Chr15(-):5992472-5994281 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.872

CDS

ATGTTGGTGTTTCCTCAATGGAGATCAGACATACGCGGCGACGGATGCAGGATCCCACGATGGATGCCCGCCGAGCGTTTCGCGCCATACTTCGCGAGGCCCGTGCCTTTAGCGCCTATGCCTCCACAAGTAGAAGATGAGGATTCGTCGGGTGGGTCATCCCCCGAGCGGTCGTACGAGACCAACGGAGAGACCGCCGAAAAGGCGGAAGGTGTTTGCGGTTGGCACGGGTGTGGTGCGAGGTGCTTGAGTGTCGCGAGACTCTCCGCACACATCGCACGCACGCACGCAATCGCACACACAGACGGACTCTTCTACTGCGGCTGGAGAGGATGCAGCAGACCTCAGAGAGGTTTCAATGCAAGATACAAAATGCTAGTCCACGTGCGAACACATACAAACGAGCGTCCGCACACATGCAACCAGTGCAATAAAAGCTTTTCCAGAGCTGAAAACTTGAAAATTCATCTCCGTTCACATTCCGGAGAAAAGCCCTACGTGTGTCCATATGAGGGTTGCGGTAAAGCCTATTCTAATTCGAGCGACCGTTTCAAGCACACGCGGACACATGCGGTGGAGAAGCCTTATTGCTGCAAAGTACCTGGATGCAACAAACGTTACACAGATCCGTCCAGTTTAAGGAAACACGTCAAAACGTACAAGCACTACACAGCCGAACAGATTGCCAAACAAGAATCGGACTCACGTAGTCCCATCACTTCGCCCAAAGAGAGCGTGATGAGCGAGCCGATGTCGCCAGTAACGTGCATCAACTGCACACCTAGCATGTCACCGACGGTACCTTACAAGCCACTAGTGGCGGACTCACTAATCCCTCAACAAATTTCATATCCAGTCGATCAATTTACGTACCTCCGCCCTATCGAGCAGATCTATCCTGTACGAGTCCCATCAAACGAGATGTCCTACATCGAGTACACGCAAATGTACGAGCACGCGTATAGAACTTACTACTCGAACGTAAACTTTCCTGTGTTGAGGCGGAGCATTAACGAGAAAGTATTTACGTACGAGGAGCAGCCTCGTCTAGACGTCTCCATGACCAATATCGAGGAAAACCCTAAAAGATATAGATCTATTGATGAAATGCCTTTGAATCTTATCTGCGCTAAACCTATTGAACGCGCGCCGATCGAAGAAGTAGTCAGACGGCCAGACTTACCTTTAGATTTAAGCACCAAAAGCTAA

Protein

MLVFPQWRSDIRGDGCRIPRWMPAERFAPYFARPVPLAPMPPQVEDEDSSGGSSPERSYETNGETAEKAEGVCGWHGCGARCLSVARLSAHIARTHAIAHTDGLFYCGWRGCSRPQRGFNARYKMLVHVRTHTNERPHTCNQCNKSFSRAENLKIHLRSHSGEKPYVCPYEGCGKAYSNSSDRFKHTRTHAVEKPYCCKVPGCNKRYTDPSSLRKHVKTYKHYTAEQIAKQESDSRSPITSPKESVMSEPMSPVTCINCTPSMSPTVPYKPLVADSLIPQQISYPVDQFTYLRPIEQIYPVRVPSNEMSYIEYTQMYEHAYRTYYSNVNFPVLRRSINEKVFTYEEQPRLDVSMTNIEENPKRYRSIDEMPLNLICAKPIERAPIEEVVRRPDLPLDLSTKS

Uniprot

H9JEB7 A0A2H1VK82 A0A2A4J718 A0A1E1WEQ1 A0A194PS13 A0A194QMF7 + More
A0A437AS22 A0A3S2LC59 A0A212FEF6 A0A2W1BE45 A0A1E1WUI3

Pubmed

19121390 26354079 22118469 28756777

EMBL

BABH01002859 ODYU01003012 SOQ41238.1 NWSH01002960 PCG67213.1 GDQN01005572 + More
JAT85482.1 KQ459596 KPI95539.1 KQ461195 KPJ06728.1 RSAL01001519 RVE40775.1 RSAL01000249 RVE43519.1 AGBW02008937 OWR52122.1 KZ150372 PZC71140.1 GDQN01007027 GDQN01006431 GDQN01000447 JAT84027.1 JAT84623.1 JAT90607.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000283053 UP000007151 + More

PRIDE

H9JEB7

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JEB7 A0A2H1VK82 A0A2A4J718 A0A1E1WEQ1 A0A194PS13 A0A194QMF7 + More
A0A437AS22 A0A3S2LC59 A0A212FEF6 A0A2W1BE45 A0A1E1WUI3

PDB

2GLI E-value=2.55666e-39, Score=407

KEGG

101745620 K09233 zinc finger protein GLIS2 | (RefSeq) zinc finger protein GLI1-like

GO

GO:0003676 GO:0046872 GO:0006183 GO:0006228 GO:0006241 GO:0016817 GO:0008270 GO:0043565 GO:0016876 GO:0043039

Length:

402

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00037

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00364

outside

1 - 402

Pi

276.787181

Theta

227.19977

Tajima's D

0.718651

CLR

0

CSRT

0.574971251437428

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics