HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.2	0.4	0.058	3.5	1	23	105	132
2	26.4	2.6	9.6e-08	5.7e-06	1	23	138	160
3	20.1	0.7	9.3e-06	0.00056	1	23	166	190
4	17.6	3.0	6e-05	0.0036	1	23	196	222

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.058
                    EEET..TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCg...ksFkrksnLkrHirtH 23 
                    ++C+  +C+   + F+ ++ + +H rtH
  KWMTBOMO08827 105 FYCGwrGCSrpqRGFNARYKMLVHVRTH 132
                    789999999******************9 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 9.6e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+ksF+r +nLk H+r+H
  KWMTBOMO08827 138 HTCNQCNKSFSRAENLKIHLRSH 160
                    79********************9 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 9.3e-06
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+Cp  +Cgk ++++s+  +H rtH
  KWMTBOMO08827 166 YVCPyeGCGKAYSNSSDRFKHTRTH 190
                    99**********************9 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 6e-05
                    EEET..TTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt..H 23 
                    y C+  +C+k+++++s+L++H +t  H
  KWMTBOMO08827 196 YCCKvpGCNKRYTDPSSLRKHVKTykH 222
                    789999****************98666 PP