Silkworm Genome Informatics Database

Gene

KWMTBOMO08275

Pre Gene Modal

BGIBMGA009525

Annotation

Fez_family_zinc_finger_protein_1_[Papilio_xuthus]

Location

Bomo_Chr14(+):3867535-3870488 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.606

CDS

ATGGATGTGTCTCGGTCCTTCTTCCGCGACGGCTTCTTTAATGAAGACCAGGATCAGTTCGCTTGGACAGAAGAAGACGGAAACATTGTTTCCCTTGTCTCGGAACCTGGGTTTGGAACTACAGGACAAACATCTTTCGGAAGGGACTTAGATATGGGTTTGCACGCTCAAACAAAGGAAGCCCAATCATCGAGTTCCATGTTTGAAGCTCGCAAAATGAGTACATCTTTAGATCGGTCTTTCGGAGGATCTCAATTAGTTTCTTCCACTACAACTGGAAATCCAGTTTTAGATCAACCAAAGAAAAATCAGGGTGCCCGTAAAGTGGATAAGTCGGATCCTCGTTCCAAAGTACATTACATGAAGTATGTGAAGAGACTCGGAAAGACTGTCAAACTATGGGAGTGTGGTGGAAGAGAGTTCCAACATCAATATACTTTAATGCGCCATCTTCCAACTCATACTGATGAGAGAAATTTTCACTGTGTAACCTGTGGGAAGAGCTTTCGACAGCTTTCGACTTTAAGCCAACACCGAGCTATACATTCTTCAGAACGGCCTTATGCTTGCGAAGTATGCAATAAAACATTTAACCGCGTCTCTACCCTGATATCCCATTGCAAGACCCATTCCAGTGAGAAACCCTACCGGTGTCATCTTTGTCCTAAAGGATTCCATCAAAAAGGCAACTTGAGAAACCATTTGTTTACGCACACAAATGAACGTCCCTACCGTTGTAATATATGCTTTAAGGGCTTCAATCAACAGTCGAATCTGGTCTGTCACAAAAATAAGGCTCATCCAGATGAAAACTCATCTACATCGAATCAAGTCCAAATTGCTGCCCAAGGAACATCTATTAGCCAAACTGGATCAGATTCAAACAGGTAA

Protein

MDVSRSFFRDGFFNEDQDQFAWTEEDGNIVSLVSEPGFGTTGQTSFGRDLDMGLHAQTKEAQSSSSMFEARKMSTSLDRSFGGSQLVSSTTTGNPVLDQPKKNQGARKVDKSDPRSKVHYMKYVKRLGKTVKLWECGGREFQHQYTLMRHLPTHTDERNFHCVTCGKSFRQLSTLSQHRAIHSSERPYACEVCNKTFNRVSTLISHCKTHSSEKPYRCHLCPKGFHQKGNLRNHLFTHTNERPYRCNICFKGFNQQSNLVCHKNKAHPDENSSTSNQVQIAAQGTSISQTGSDSNR

Uniprot

A0A2A4K2C8 A0A3S2PJ92 A0A194PZK1 A0A0N0PCY4 A0A212F066 E0VNK7 + More
A0A0P5SS46 A0A165AFD2 A0A2G8JBS8

Pubmed

26354079 22118469 20566863 29023486

EMBL

NWSH01000228 PCG78209.1 RSAL01000016 RVE53025.1 KQ459585 KPI98169.1 + More
KQ460426 KPJ14787.1 AGBW02011154 OWR47139.1 DS235340 EEB14963.1 GDIP01136084 JAL67630.1 LRGB01000626 KZS17567.1 MRZV01002700 PIK33195.1

Proteomes

UP000218220 UP000283053 UP000053268 UP000053240 UP000007151 UP000009046 + More
UP000076858 UP000230750

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4K2C8 A0A3S2PJ92 A0A194PZK1 A0A0N0PCY4 A0A212F066 E0VNK7 + More
A0A0P5SS46 A0A165AFD2 A0A2G8JBS8

PDB

2I13 E-value=2.96436e-23, Score=267

KEGG

NA

GO

GO:0003676 GO:0016021 GO:0046872 GO:0003917 GO:0016887 GO:0005634 GO:0030145 GO:0006412 GO:0016876 GO:0043039

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000550000000000001

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.02920

outside

1 - 296

Pi

226.727188

Theta

177.891598

Tajima's D

0.647273

CLR

0.070312

CSRT

0.55927203639818

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics