SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08089
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location
Bomo_Chr13(+):15401536-15407396      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.301
 

Sequence

CDS
ATGCCGGAATGTCATACACCAACCCCAACACCTGCAATCCGTGTGGCCCCGATGGGACCCGGTGCGGGCAGTTCGTCCGGGCCTTCGGCCGCGGCCAGGGAATCCCTGAGGATCGTACCGGTGGAAAGTAACTTTCCTTCGTCGGCCGATCCCTCCGGGCCCTCTCGGCCGCGGAAGAAGGCCAGGTCAGAGTCTGACCGAGGCTCATCGGGTGACCAAGATAAACGCCCGCGTATAGGCCCTTCCTCCAGGTCGGAGGGAGAAGAGAGCGTGACCACGTCCACGGATCACTCCTCTACCGAGTCTATCACTCCTTCCTCGTCAAGATCCACTTCCCCCTCTGGGAGTCCAATCCCAGTCCAACCCGTTCCCAAGCCTAGAGCACCCGCCAGGACAGGGATTGCTCCTAGGCAATTGAGAACCCCTCCTCACTCCCCTTCCCCAACTTTATCCCCAATCCCGGTGGACTCTACCCGAGGTGCCCCCGCCCTAAGCGGCACGGCGGGTAACCTGGACTCCACCAGGTACATGGACCTCGAGTCCACCAGACCACGTCACGCCCCTATGCCTAACCCCATTCCCTCTACCTCCTATGCTGCCATGGCAGCTAGGCCGAGTATTCCTTCCACCCAGAGGACATCCCAATCCTCTCATGTCCCTCCCCCGAGGCCGAAGGGTCGTGCCCAAGAGGGGCTGCGCCGACATCCGCCAATAATGGTGGAGGCCCTTCCTAATTGGTCCCGCCACATGGCGGCCATTAGGGAGCGCCTCGGTCGCGCCCCCTCGGTGCGACCCTTCGGCGCCGGCTTTAGATTCCTGCCGACGTCGGTAGAGGAATACAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGATGGTACCATAAAATGGTACTGCTATGCCCTGACAGGGGAGATTCCGACTAAGGTGGCTGTCCGGGGCCTCCCTGCCGATACTGACGCGGCAGAAGTAACCGATGCCCTGAAGGAGCTGGGGTTTCCGGCTCGTCACGCCAGGTGCATCAGGTCCCAGAGAGGGCGCCCGGGCTGCGTGTTCCACGTAGCCTTGGACCACCTCTCGAAGGACGACCTCGCCCGCCTGTACGCAGTCAATGAACTGCTGTACTTGCCGGGGGTGACGATTGAGGGATGGCGACCAACCCGCGGGCCTGCGCAGTGTCATCGCTGCCAGGCCTTCGGGCACGCCTCCAATAATTGTCACCGAGCGGTCCGCTGCGTTCGATGTGCCGGGGAGCATGTCGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCATTCTCCTGCGCCAATTGCGGGAAAGATCACGCTGCCGTCGACAGGCGGTGCGCGGTCTACCGCAAGAGGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCTGCGCCGTTGGTGCCTCGATCCGGGAACACAGCTCCTCCTCCTTCTGTAGCTCCCATTCCGAAGGGGAAGGGGAAAGGGAAAGGGAAATCTTCCCAACCCCAACCCCCTCCCCCGTCCTCACCCATCCCCCCTGCCGTGTCAGTGGAGGCCAATCCATCAGCGGCAACGCTGATGGCAGAGGCCAACGCTCCGCGGCGGGGTATACCTGTTCCTACCCCTCGTGGTTCACACGCTGTTAGATTGCCCCATCCTAATAGCAGTGTTCCAGCTCGTGCTGGAACTCAAGTCCCACAATTATCAGGTCCGAAACAAAAAAAAAACCGACTAAAAAAAATAAAAAAAAAATTAAGGAAGAGAGCCCAACGGGATGCAGTGGTGAGTGCTCCTACTGCACCGGCTCCCGCGGCTCCTTTAACAATGGAGGTGGACGTGAACCCACCCATCGACCCAACTTCTCAACCGACTTCACAATCGGGAACGACCCCACTGCCCCAGGCCCAACCAGCCATCTCGGGCACATCTCAGCCCCCCCTCCCCCCCCGCCCTCAGCGCGAGCGCCGCAGCGGTCGACAGGCCTCCCAGCCTGCCGGCTTTGCTGCATGGCTGCTCGCACTGTGGGAGAAATTGTCCGAGGAGCTGCGCATCATTTATTGGAACCCCGACGGGATAAAGTCCCGAAAGAACGACCTGCTTGTTCTCGCCCGGGAGTATAACCCAGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCAGGATGCGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTCGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTTCACCCTGAGGACATAAGACGGGCCCTGAATCACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTTAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCCGTGGTCGGCCCCGACGAACCCACACACATCCCGACCGCCGCGCGCTATCAGCCCGATGTGCTGGACGTGTGTGTGCACAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTATCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTGATTCAGGACCCCAACACCCCTGATGGGGTCGACGATGCGGCAACCCGCCTTGTTGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAGGCGATTATTCGCCGGAAGAGGGGCTTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATAAAGCGCGAGCTTAATGAACTGGAAGCGGAGCTGGCGACAAAGATTAGCACCTTTCGGGGCTATGCCTGGCAGGAGAGGATCGAGGAGGCCCGCGAGGACCCCTCCTCAGTATCCCTCCACCGGCTTTGTCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGAAATGCTGGAGCGGCAGTTCGCTCCTAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATCTCATCACTCCCAGCGAATTGCGCCTCATCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCTTTTTTCCACTTCCCTGAAACGGTCATGTCATATATGACACGGCTGTTCAACTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGACAGGAGAAATCCCTCCAGTTACCGTCCGATCACGCTGCTGTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGATGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGTAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGACCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGACATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCGCAGGGGAGCGTCCTGGCACCATTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTCGAGGGCAACCTCGAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGTTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATTCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAATTGGCGTTGGCGGCCGCTCGCTACGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGCCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGTAATGCCGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATTTAGCTCCCTTGCACGCTAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGAATCAAAAAGTGAAATCGTTTTACTTGGTGTTCAACAAGATAATGTCTACCCTCAAGCCTACATCAGAAGTGAGATCAGGACTCTACTCTCACTGGCGTGA
Protein
MPECHTPTPTPAIRVAPMGPGAGSSSGPSAAARESLRIVPVESNFPSSADPSGPSRPRKKARSESDRGSSGDQDKRPRIGPSSRSEGEESVTTSTDHSSTESITPSSSRSTSPSGSPIPVQPVPKPRAPARTGIAPRQLRTPPHSPSPTLSPIPVDSTRGAPALSGTAGNLDSTRYMDLESTRPRHAPMPNPIPSTSYAAMAARPSIPSTQRTSQSSHVPPPRPKGRAQEGLRRHPPIMVEALPNWSRHMAAIRERLGRAPSVRPFGAGFRFLPTSVEEYRAVQAYLSEASARDGTIKWYCYALTGEIPTKVAVRGLPADTDAAEVTDALKELGFPARHARCIRSQRGRPGCVFHVALDHLSKDDLARLYAVNELLYLPGVTIEGWRPTRGPAQCHRCQAFGHASNNCHRAVRCVRCAGEHVVADCPRPRDGPFSCANCGKDHAAVDRRCAVYRKRARMMGVTVPPPAPLVPRSGNTAPPPSVAPIPKGKGKGKGKSSQPQPPPPSSPIPPAVSVEANPSAATLMAEANAPRRGIPVPTPRGSHAVRLPHPNSSVPARAGTQVPQLSGPKQKKNRLKKIKKKLRKRAQRDAVVSAPTAPAPAAPLTMEVDVNPPIDPTSQPTSQSGTTPLPQAQPAISGTSQPPLPPRPQRERRSGRQASQPAGFAAWLLALWEKLSEELRIIYWNPDGIKSRKNDLLVLAREYNPEVVLLGETKLRPQDAFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNHDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPDGVDDAATRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELATKISTFRGYAWQERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAEMLERQFAPNDSAPSEAAFHQSVEESVASLLSSPVPPLGDGDLITPSELRLIIKRMKRRKAPGEDGIPSLAFFHFPETVMSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRMSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRTNARQYTAAVFLDIEKAFDRVWHAGLIHKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPFLYALYTNDIPTLEGNLEAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHAKLALAAARYARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAAAWYHLIPQAMRVKLQAQQNLALRTIVGAGRYVSNAVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNLAPLHARPPDGLALPRELLEPPAMESKSEIVLLGVQQDNVYPQAYIRSEIRTLLSLA

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=6.20211e-05,     Score=116

Ontologies

KEGG
105842529    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form
GO
GO:0003676   GO:0008270   GO:0005840   GO:0006412   GO:0015934   GO:0015914   GO:0046872   GO:0016876   GO:0043039  

Topology

Length:
1613
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01503
Exp number, first 60 AAs:
0.00119
Total prob of N-in:
0.00007
outside
1  -  1613
 
 

Population Genetic Test Statistics

Pi
1.334285
Theta
11.895654
Tajima's D
-0.819433
CLR
77.830134
CSRT
0.172791360431978
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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