Gene

KWMTBOMO07697

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr13(+):4670101-4674045      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.017 Nuclear   Reliability : 1.726

CDS

ATGTACTTGCCGGGGGTGACGGTTGAGGGATGGCGTCCAAACCGAGGACCTGCGCAGTGTCACCGCTGCCAGGCCTTCGGTCACGCGTCCACCAATTGTCACCGTGCGGTCCGCTGCGTTCGATGTGCCGGCGAGCACATTGTGGCGGACTGCCCGAGGCCAAGGGATGGCCCATTATCCTGTGCAAATTGCGGGAAGGACCACGCCGCCATCGATCGGCGTACCATTCCGTCTGTCTCGGTAGTGGAGGCAGCGCCGTCAGCGACCACGCTGATGGCGCAGGCCAACCCGCCGCGACAGACCAAAACGTCCAACCCCACTCCTCGTGGCCGAGCCCAAATTATAGCTGTCACCACAGCCCACGACACTCGCCAGACAGCCGGCTCAGCCCCTAAATCTACAAAAAATAAAATTAAAAATAAAAAAAAGAAGGAGAGGAAGAAACTCTTGAAGAAAATGGCGAGAGAGAGCAGCGCCAGAAACATGGAAGTGGACCAACAACTTCATGAGGCCATGGAAGCCAACGTAACTGCCGACCCTAACCCTCCACAACTGGAGGGACAAACATTGCCTCAAGCTCAATCTGAGCCGTTGGGCAATACTCTGCCCCCTCTTCCCCCCCGCCCTCAGCGCGAGCAGCGCAGCGGTCGGCAGGCCTCACAGCCTGCCGGCTTTGCTGCATGGCTTCTCGCGCTCTGGGAAAAATTGTCCGAGGTGGTCTCCGGAGTGATCCGCGAGATCGCCTCGGGAGCCAGCCCTTTCGGGGCTCTCTTGTCGGGGGTTGTACTCCCGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGAGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTTCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTTCCGACTGAACTCAGCGGTGGGCAGGCGGCTGTTAGAAGATGCCGATATGGACGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAGGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTCACACTGGGAATGGGGCTTACCCGGGTTGCGACCTCGCCCCTACGACCGAGGGTCGACTGGGAGCTCTTTAAGAGACGCCTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGTGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGTGACGACTCTTGTGCCCAGCGGCGGGCCCAAAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAGCGGAGTTGGAGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGTCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGACGCTTCTCGGCTCAGGCCCGCGCCGATATCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCGGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCCTCAAATTTCCCTTCTGCGGCCATTACGAGGATGCAGAGGCTGTTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATTCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTTCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAGTATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAACGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MYLPGVTVEGWRPNRGPAQCHRCQAFGHASTNCHRAVRCVRCAGEHIVADCPRPRDGPLSCANCGKDHAAIDRRTIPSVSVVEAAPSATTLMAQANPPRQTKTSNPTPRGRAQIIAVTTAHDTRQTAGSAPKSTKNKIKNKKKKERKKLLKKMARESSARNMEVDQQLHEAMEANVTADPNPPQLEGQTLPQAQSEPLGNTLPPLPPRPQREQRSGRQASQPAGFAAWLLALWEKLSEVVSGVIREIASGASPFGALLSGVVLPGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYAAYRPPGPDFHPGDIRRVLNCDSRPALLVGDLNAKHVAWGFRLNSAVGRRLLEDADMDDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPRVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQVTTLVPSGGPKGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELEAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRRFSAQARADILAVMLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARRYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAITRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVSIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WZH0   X1WNI2   J9LFC9   J9LC21   + More
A0A1Y1NA23   X1WLB2   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q6J2   A0A2J7QR37   J9KPF1   A0A2J7PU96   A0A224X6Q4   V5GNJ2   A0A023EYS8   A0A224XB44   A0A2J7PDM0   A0A2J7R098   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7QES2   V5GNF3   A0A2J7PSM7   A0A2J7PMN4   A0A2J7RQ52   A0A2S2NGV8   A0A2J7R7D0   A0A023EZE6   A0A2S2Q383   A0A2H8TF37   A0A069DZL8   A0A0A9YJ00   A0A0A9YU04   A0A139W8G9   A0A2A4K918   A0A023F069   K7IN67   A0A2J7QB68   A0A2M4CV52   A0A224XIB0   Q9BPQ0   Q9XXW0   A0A224XHW8   A0A2S2R9D4   A0A2S2NH02   A0A1Y1KFR3   A0A0N1PFV1   A0A1Y1LKN6   A0A224XF24   A0A069DX78   J9LYS0   A0A2S2PPK8   A0A023F0I3   A0A2S2P6C4   O96546   A0A087UGF5   A0A142LX53   A0A224X6R6   A0A2A4IUM2   A0A2S2P6S3   Q93137   A0A2S2N814   A0A2J7RD70   P21328   A0A2H8TKI9   A0A2S2PUS3   A0A2M4BD83   A0A2S2N6Q7   A0A1W7R668   A0A2J7PQB5   A0A1Q3G5F7  

EC Number

2.7.7.49

Pubmed

28004739    25474469    26334808    25401762    18362917    19820115    + More
20075255    10333566    26354079    10380107    25527032    2463954    3040362    1714378   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02034467    ABLF02008153    + More
ABLF02008462    ABLF02008464    ABLF02023911    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GEZM01008457    JAV94772.1    ABLF02042518    ABLF02057746    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01017470    PNF24199.1    NEVH01011985    PNF31054.1    ABLF02041767    NEVH01021205    PNF19912.1    GFTR01008279    JAW08147.1    GALX01005299    JAB63167.1    GBBI01004395    JAC14317.1    GFTR01008262    JAW08164.1    NEVH01026386    PNF14434.1    NEVH01008277    PNF34262.1    NEVH01007402    PNF35856.1    NEVH01016340    PNF25410.1    NEVH01015305    PNF27092.1    GALX01005359    JAB63107.1    NEVH01021925    PNF19341.1    NEVH01023979    PNF17579.1    NEVH01001347    PNF42959.1    GGMR01003407    MBY16026.1    NEVH01006736    PNF36716.1    GBBI01004571    JAC14141.1    GGMS01002992    MBY72195.1    GFXV01000908    MBW12713.1    GBGD01000415    JAC88474.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    KQ973342    KXZ75569.1    NWSH01000032    PCG80496.1    GBBI01003810    JAC14902.1    NEVH01016302    PNF25823.1    GGFL01004957    MBW69135.1    GFTR01008246    JAW08180.1    AB055391    BAB21761.1    AB018558    BAA76304.1    GFTR01008254    JAW08172.1    GGMS01017365    MBY86568.1    GGMR01003864    MBY16483.1    GEZM01084969    JAV60363.1    KQ459265    KPJ02064.1    GEZM01053022    JAV74219.1    GFTR01008038    JAW08388.1    GBGD01000389    JAC88500.1    ABLF02041861    GGMR01018716    MBY31335.1    GBBI01003747    JAC14965.1    GGMR01012283    MBY24902.1    AF081103    AAC72921.1    KK119692    KFM76444.1    KU543687    AMS38379.1    GFTR01008269    JAW08157.1    NWSH01007753    PCG62823.1    GGMR01012443    MBY25062.1    U07847    AAA17752.1    GGMR01000676    MBY13295.1    NEVH01005295    PNF38784.1    M22874    M38643    GFXV01002840    MBW14645.1    GGMR01020516    MBY33135.1    GGFJ01001822    MBW50963.1    GGMR01000226    MBY12845.1    GEHC01000978    JAV46667.1    NEVH01022639    PNF18527.1    GFDL01000004    JAV35041.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000007266    UP000002358    + More
UP000053268    UP000054359   

PRIDE

Q9BPQ0    Q9XXW0    Q93137    P21328   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WZH0   X1WNI2   J9LFC9   J9LC21   + More
A0A1Y1NA23   X1WLB2   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q6J2   A0A2J7QR37   J9KPF1   A0A2J7PU96   A0A224X6Q4   V5GNJ2   A0A023EYS8   A0A224XB44   A0A2J7PDM0   A0A2J7R098   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7QES2   V5GNF3   A0A2J7PSM7   A0A2J7PMN4   A0A2J7RQ52   A0A2S2NGV8   A0A2J7R7D0   A0A023EZE6   A0A2S2Q383   A0A2H8TF37   A0A069DZL8   A0A0A9YJ00   A0A0A9YU04   A0A139W8G9   A0A2A4K918   A0A023F069   K7IN67   A0A2J7QB68   A0A2M4CV52   A0A224XIB0   Q9BPQ0   Q9XXW0   A0A224XHW8   A0A2S2R9D4   A0A2S2NH02   A0A1Y1KFR3   A0A0N1PFV1   A0A1Y1LKN6   A0A224XF24   A0A069DX78   J9LYS0   A0A2S2PPK8   A0A023F0I3   A0A2S2P6C4   O96546   A0A087UGF5   A0A142LX53   A0A224X6R6   A0A2A4IUM2   A0A2S2P6S3   Q93137   A0A2S2N814   A0A2J7RD70   P21328   A0A2H8TKI9   A0A2S2PUS3   A0A2M4BD83   A0A2S2N6Q7   A0A1W7R668   A0A2J7PQB5   A0A1Q3G5F7  

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519   GO:0003676   GO:0008270   GO:0032259   GO:0046983   GO:0015935   GO:0016573   GO:0022891   GO:0003707   GO:0051537  

Length:

1113

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02981

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1  -  1113

 

 

Pi

237.916514

Theta

202.145546

Tajima's D

0.451916

CLR

139.158996

CSRT

0.500474976251187

Interpretation

Uncertain