Gene

KWMTBOMO07464

Annotation

PREDICTED:_transmembrane_protein_136-like_[Papilio_machaon]

Location

Bomo_Chr12(-):13841197-13844231      View in EpiBrowser

Full name

POU domain protein      

Transcription factor

TRAM_LAG1_CLN8

Location in the cell

PlasmaMembrane   Reliability : 4.683

CDS

ATGGAGTTAGGTCCCGAACTTTCTACTGCGTCTTTATTAAAGTTGATCTCATTCGTAACTTGGAGTTGGCTTTATCTGTGGTTCGCGCGTGATGGTAACAAAAGCCCAGAGTGGTGCTCAAGGGCAGTGACCCTCCTGCACGGAAGCGTTGCTACAGTCGTCGGTTTATATCAATGCGGAGCAGAAGCTATAACGCCATGCCGACTTACCATGAAGACAACGCCGTGGCATTACGCTCTAATGCTATGGTCCTGGGGTTACTTCGCATTCGACCTTCTGTGGTGCTTCGTGTACTGGGGCGATCACTATCTGATGCTCGTTCATCACACTAGCGCTCTGGTTGCTGTTACTGTATACACACAAAAAGACTATACAGGTTGCACGTTTGCTTGCACGCTGGCGTTTTTAGAAGTCACCAATCCCCTACTGCAACTACGATGGTTTTTAAAAAGCAATGGTTATGCCAAAACCGTTCTTTACACTATGGTGGAGGTGACATATCTTGTGACGTTCCTGTTTGTGAGAGGTATTCTTGGAACGTACATAATGATGAGAATCCTAAAATCGGATATATTCGACGTTGACGAGAAACTGATATCTCTAGTTTTCTACATTGTTTCGGTGGCTTTTATTTATGACATTGTCGGCTACGTTTTATACAGATACAAACCAAAAATCGAAGGTTTCAAACATTTCTTAGAACATGCAGAGTTAATTTTGAATGAACATCTATGA

Protein

MELGPELSTASLLKLISFVTWSWLYLWFARDGNKSPEWCSRAVTLLHGSVATVVGLYQCGAEAITPCRLTMKTTPWHYALMLWSWGYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFLKSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSDIFDVDEKLISLVFYIVSVAFIYDIVGYVLYRYKPKIEGFKHFLEHAELILNEHL

Similarity

Belongs to the POU transcription factor family.

Uniprot

A0A3S2LS17   A0A0N1IPB8   A0A194PU24   A0A212FF04   A0A2A4JDU8   A0A0L7KTP8   + More
A0A2H1VRT7   D2A2Y8   A0A1B6E4L2   A0A2P8XB46   A0A1W4WD57   A0A2R7W566   A0A0A9XJP4   A0A3B5QHD7   A0A3P9QFK4   A0A3B5MB16   A0A224XWJ8   A0A3Q2XVH4   A0A069DR04   T1ITI6   A0A1X7UQB9   T1I360   A0A2P4SI43   A0A023F6C1   A0A226NDZ6   A0A3B3WWK9   A0A3B3VQL8   A0A087XLT0   A0A1B6KJX4   A0A146P3L9   A0A3Q4GKE0   A0A3Q3G5L9   A0A1D5NZD1   A0A3Q2CKZ2   A0A1A7ZK99   A0A1A8BHR2   A0A1A8JFF4   A0A1A8FF07   I3JFZ7   A0A3Q1IF85   A0A3Q0QWU0   A0A1A8PDJ3   A0A1A8L4Q5   A0A3B4GNL5   A0A3Q2W3J3   A0A3P8QHL3   A0A3P9CFR6   A0A1A7Y5J3   A0A3Q3LWE9   A0A3B3B507   A0A3P8WGB3   A0A3B4XGD6   A0A3B4VEX3   A0A3B3CWH5   V8NUB2   A0A0L8FIW3   A0A3Q3AP50   J3JWR1   H0YQ74   A0A226PMH9   A0A2B4SCM9   A0A0F8CET3   A0A3B5KRM1   A0A3B4ZD40   A0A3B5QGD1   A0A3Q1BSM6   A0A3P8T0W1   A0A3B3VIB5   A0A3B3YEA1   A0A3B5Q9M4   A0A3M6V5U0   A0A3P9PHE3   A0A087XB98   G3P309   A0A3Q3IYC3   S4RZK7   E7F142   A0A267EIL6   A0A2U9B5C2   A0A3B5QZW3   H3C064   A0A2G8LLB4   A0A2I4AYZ7   A0A3B3HF84   U3JTZ3   A0A267GF55   A0A151NQI0   A0A0Q3ML46   A0A3Q1FXU4   A0A218UD24   A0A3L8RZG1   A0A267EXW1   A0A3Q4BBI8   S4RZL3   A0A3P9KHF0   A0A3B4TYP2   A0A3B4WJ50   A0A3Q3WV79  

Pubmed

26354079    22118469    26227816    18362917    19820115    29403074    + More
25401762    26823975    23542700    26334808    25474469    25186727    15592404    29451363    24487278    24297900    22516182    20360741    24621616    25835551    30382153    23594743    15496914    29023486    17554307    22293439    30282656   

EMBL

RSAL01000020    RVE52621.1    KQ460636    KPJ13391.1    KQ459592    KPI96817.1    + More
AGBW02008864    OWR52335.1    NWSH01001749    PCG70257.1    JTDY01005774    KOB66642.1    ODYU01004038    SOQ43508.1    KQ971338    EFA01982.1    GEDC01024208    GEDC01004443    JAS13090.1    JAS32855.1    PYGN01022131    PYGN01005210    PSN28954.1    PSN29223.1    KK854227    PTY13355.1    GBHO01023733    GBHO01023732    GBRD01005848    GDHC01015477    JAG19871.1    JAG19872.1    JAG59973.1    JAQ03152.1    GFTR01003903    JAW12523.1    GBGD01002748    JAC86141.1    JH431485    ACPB03003282    PPHD01046252    POI23780.1    GBBI01001943    JAC16769.1    MCFN01000082    OXB65748.1    AYCK01003459    GEBQ01028523    JAT11454.1    GCES01147987    JAQ38335.1    AADN05000201    HADY01004241    HAEJ01007391    SBP42726.1    HADZ01002487    HAEA01004458    SBP66428.1    HAED01021912    HAEE01013927    SBR08665.1    HAEB01010861    HAEC01006369    SBQ57388.1    AERX01025120    HAEI01002140    HAEH01007936    SBR79119.1    HAEF01002071    HAEG01001761    SBR39453.1    HADW01009792    HADX01003485    SBP25717.1    AZIM01001824    ETE65655.1    KQ430678    KOF63807.1    BT127679    AEE62641.1    ABQF01045563    ABQF01045564    ABQF01045565    ABQF01045566    ABQF01045567    AWGT02000038    OXB81295.1    LSMT01000117    PFX26849.1    KQ041048    KKF31046.1    RCHS01000098    RMX60948.1    AYCK01009933    CR457443    NIVC01002045    PAA61338.1    CP026245    AWO99025.1    MRZV01000041    PIK61058.1    AGTO01010983    NIVC01000364    PAA84678.1    AKHW03002395    KYO39034.1    LMAW01001558    KQK83247.1    MUZQ01000417    OWK51634.1    QUSF01000105    RLV91892.1    NIVC01001620    PAA65767.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    + More
UP000007266    UP000245037    UP000192223    UP000002852    UP000242638    UP000261380    UP000264820    UP000007879    UP000015103    UP000198323    UP000261480    UP000261500    UP000028760    UP000265000    UP000261580    UP000261660    UP000000539    UP000265020    UP000005207    UP000265040    UP000261340    UP000261460    UP000264840    UP000265100    UP000265160    UP000261640    UP000261560    UP000265120    UP000261360    UP000261420    UP000053454    UP000264800    UP000007754    UP000198419    UP000225706    UP000261400    UP000257160    UP000265080    UP000275408    UP000007635    UP000261600    UP000245300    UP000000437    UP000215902    UP000246464    UP000007303    UP000230750    UP000192220    UP000001038    UP000016665    UP000050525    UP000051836    UP000257200    UP000197619    UP000276834    UP000261620    UP000265180   

Pfam

PF03798   TRAM_LAG1_CLN8        + More
PF12348   CLASP_N
PF00046   Homeodomain
PF00157   Pou

Interpro

IPR006634   TLC-dom        + More
IPR024395   CLASP_N_dom       
IPR016024   ARM-type_fold       
IPR034085   TOG       
IPR011989   ARM-like       
IPR010982   Lambda_DNA-bd_dom_sf       
IPR009057   Homeobox-like_sf       
IPR000972   TF_octamer       
IPR001356   Homeobox_dom       
IPR000327   POU_dom       
IPR013847   POU       
IPR017970   Homeobox_CS       

SUPFAM

SSF48371   SSF48371        + More
SSF46689   SSF46689       
SSF47413   SSF47413       

Gene 3D

1.25.10.10    

CDD

cd00086  homeodomain

ProteinModelPortal

A0A3S2LS17   A0A0N1IPB8   A0A194PU24   A0A212FF04   A0A2A4JDU8   A0A0L7KTP8   + More
A0A2H1VRT7   D2A2Y8   A0A1B6E4L2   A0A2P8XB46   A0A1W4WD57   A0A2R7W566   A0A0A9XJP4   A0A3B5QHD7   A0A3P9QFK4   A0A3B5MB16   A0A224XWJ8   A0A3Q2XVH4   A0A069DR04   T1ITI6   A0A1X7UQB9   T1I360   A0A2P4SI43   A0A023F6C1   A0A226NDZ6   A0A3B3WWK9   A0A3B3VQL8   A0A087XLT0   A0A1B6KJX4   A0A146P3L9   A0A3Q4GKE0   A0A3Q3G5L9   A0A1D5NZD1   A0A3Q2CKZ2   A0A1A7ZK99   A0A1A8BHR2   A0A1A8JFF4   A0A1A8FF07   I3JFZ7   A0A3Q1IF85   A0A3Q0QWU0   A0A1A8PDJ3   A0A1A8L4Q5   A0A3B4GNL5   A0A3Q2W3J3   A0A3P8QHL3   A0A3P9CFR6   A0A1A7Y5J3   A0A3Q3LWE9   A0A3B3B507   A0A3P8WGB3   A0A3B4XGD6   A0A3B4VEX3   A0A3B3CWH5   V8NUB2   A0A0L8FIW3   A0A3Q3AP50   J3JWR1   H0YQ74   A0A226PMH9   A0A2B4SCM9   A0A0F8CET3   A0A3B5KRM1   A0A3B4ZD40   A0A3B5QGD1   A0A3Q1BSM6   A0A3P8T0W1   A0A3B3VIB5   A0A3B3YEA1   A0A3B5Q9M4   A0A3M6V5U0   A0A3P9PHE3   A0A087XB98   G3P309   A0A3Q3IYC3   S4RZK7   E7F142   A0A267EIL6   A0A2U9B5C2   A0A3B5QZW3   H3C064   A0A2G8LLB4   A0A2I4AYZ7   A0A3B3HF84   U3JTZ3   A0A267GF55   A0A151NQI0   A0A0Q3ML46   A0A3Q1FXU4   A0A218UD24   A0A3L8RZG1   A0A267EXW1   A0A3Q4BBI8   S4RZL3   A0A3P9KHF0   A0A3B4TYP2   A0A3B4WJ50   A0A3Q3WV79  

KEGG

101738174    no KO assigned | (RefSeq) transmembrane protein 136-like

GO

GO:0016021   GO:0003700   GO:0005634   GO:0043565   GO:0000166   GO:0004842   GO:0005680   GO:0006520   GO:0006508   GO:0008237   GO:0016020   GO:0003707   GO:0051537  

Subcellular location

Nucleus  

Length:

244

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

107.6952

Exp number, first 60 AAs:

31.71742

Total prob of N-in:

0.50552

POSSIBLE N-term signal

sequence

outside

1  -  9

TMhelix

10  -  29

inside

30  -  77

TMhelix

78  -  100

outside

101  -  156

TMhelix

157  -  179

inside

180  -  197

TMhelix

198  -  220

outside

221  -  244

 

 

Pi

30.657938

Theta

31.449933

Tajima's D

-0.244085

CLR

0.547016

CSRT

0.306534673266337

Interpretation

Uncertain