Silkworm Genome Informatics Database

Gene

KWMTBOMO07222

Pre Gene Modal

BGIBMGA010370

Annotation

PREDICTED:_nuclear_receptor_subfamily_2_group_E_member_1_[Amyelois_transitella]

Location

Bomo_Chr12(-):8517532-8543915 View in EpiBrowser

Transcription factor

RXR-like

Location in the cell

Nuclear Reliability : 3.783

CDS

ATGAGACAGTTCATTACAGGGAATGCTGGCGTCGATGCGTACCTACTGATGGGTAGGCGAGACAGACTTCTAGATATACCGTGCAACGTGTGTGGAGACAGAAGTTCAGGGAAACATTATGGAATATACAGTTGTGACGGTTGCTCCGGTTTCTTCAAGCGGTCTATCCACAGAAATCGTGTGTACACGTGTAAAGCGGGAGGCGAGATGAAGGGAAGATGTCCAGTGGATAAAACACACAGGAATCAGTGCCGAGCGTGCCGTCTCGCGAAATGCTTCCAAGCCAACATGAATAAAGATGCAGTCCAACACGAACGTGGCCCTCGTAAGCCTAAGTTGCATGCGGGAGCGTTGAGCTCGCTGCCACCTCCGTCGATGACGCACGCTCACAAACCGCAGGTCCTCAAACTGTCACCGCCCTCGCCGTATGCACCACTGTCACTTCCACAGCCGCTCAACTTTCAATTCAGTTTAAGCGGTATGAACGAGCCGGCTCCGCTCAGCGCGGCCTCGTCGGCTGGGTCTAGCGCCGCTGGCACTGGTGCCTGTAGCCCGTTACCGCTCGTGCCGGACTCGTTCCTACCACCACCGCCTCCTGGACTACTACACATTTTAATGTCTACCGATAAATGTCATGAACTCATGTGGAGTGCCAAGCAACTTCAGCTTCAAGGCGATCCGACGTTATTACGGCCCCCGCCCAGTGCATTTGGTGCTCCTTTAGCCCCAACATGGGAACTTCTGCAGGAAACAAGTGCTCGTCTCTTATTTATGGCGGTCCGGTGGGTGCGGTGCTTGGCGCCATTCCAAGCGTTATCACCGTCAGATCAACTGGTTCTACTTCGAGCGGCATGGAAGGACTTGTTCTTGTTGCACTTGGCGCAGTGGTCGGCTCCTTGGGATCTCGCGCCGTTGTTATCGGCCCCGGCGGCCAGGGCTCGCCTGCCCCCTGACCCGCTCGCGGATTTGGAACTTAATACTTTACAGGAGATTTTGTGCCGATTTCGTCAAATAGCACCTGATGGCAGCGAATGTGGGTGCATGAAAGCGATTGTACTATTTTCACCAGATACAGCCGGACTTAGTGAGACCCAACCAGTCGAAATGCTTCAAGATCAAGCACAATGTATTCTAGCAGATTATGTGCGCACTAGATATACCAGACAACCTACCAGGTTCGGTCGCCTCCTGCTGCTGTTACCGTCGCTCCGCGCTGTGCGAGCGCGTTCCATCGAGCTCCTACTGTTCCGAGACACAGTCGGCGACGTGTCCGTTACCACACTGCTACACGACATGTACCGAATGCAACCGGCACCAGCGCCCCCATTCCACGCTCCTCATCCCCACACGACAACTGAACATTGTTCATCGCCCTAA

Protein

MRQFITGNAGVDAYLLMGRRDRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKTHRNQCRACRLAKCFQANMNKDAVQHERGPRKPKLHAGALSSLPPPSMTHAHKPQVLKLSPPSPYAPLSLPQPLNFQFSLSGMNEPAPLSAASSAGSSAAGTGACSPLPLVPDSFLPPPPPGLLHILMSTDKCHELMWSAKQLQLQGDPTLLRPPPSAFGAPLAPTWELLQETSARLLFMAVRWVRCLAPFQALSPSDQLVLLRAAWKDLFLLHLAQWSAPWDLAPLLSAPAARARLPPDPLADLELNTLQEILCRFRQIAPDGSECGCMKAIVLFSPDTAGLSETQPVEMLQDQAQCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIELLLFRDTVGDVSVTTLLHDMYRMQPAPAPPFHAPHPHTTTEHCSSP

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

A0A2A4K8H5 A0A3S2LJB7 A0A1W4WEP8 A0A1S5UZQ0 A0A2H1W2L9 A0A194R5M6 + More
D6W9X6

Pubmed

26354079 18362917 19820115

EMBL

NWSH01000030 PCG80521.1 RSAL01000001 RVE55105.1 KX373877 AQN67836.1 + More
ODYU01005915 SOQ47298.1 KQ460883 KPJ11166.1 KQ971312 EEZ99270.2

Proteomes

UP000218220 UP000283053 UP000192223 UP000053240 UP000007266

Pfam

PF00105   zf-C4        + More
PF00104   Hormone_recep
PF07687   M20_dimer
PF01546   Peptidase_M20

Interpro

IPR002933   Peptidase_M20        + More
IPR001723   Nuclear_hrmn_rcpt
IPR036264   Bact_exopeptidase_dim_dom
IPR011650   Peptidase_M20_dimer
IPR035500   NHR-like_dom_sf
IPR000536   Nucl_hrmn_rcpt_lig-bd
IPR001261   ArgE/DapE_CS
IPR001628   Znf_hrmn_rcpt
IPR013088   Znf_NHR/GATA
IPR010159   N-acyl_aa_amidohydrolase

SUPFAM

SSF55031 SSF55031 + More
SSF48508 SSF48508

Gene 3D

1.10.565.10 3.30.50.10

ProteinModelPortal

A0A2A4K8H5 A0A3S2LJB7 A0A1W4WEP8 A0A1S5UZQ0 A0A2H1W2L9 A0A194R5M6 + More
D6W9X6

PDB

4LOG E-value=2.09502e-32, Score=348

KEGG

101746668 K07295 nuclear receptor subfamily 2 group A | (RefSeq) photoreceptor-specific nuclear receptor

GO

GO:0008270 GO:0003700 GO:0004046 GO:0006520 GO:0005634 GO:0005737 GO:0008237 GO:0003707 GO:0043565 GO:0046872 GO:0003677 GO:0006355 GO:0004879 GO:0043401 GO:0051537

Subcellular location

Nucleus

Length:

458

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00386

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00447

outside

1 - 458

Pi

25.896652

Theta

16.174822

Tajima's D

0.388279

CLR

0.783937

CSRT

0.490025498725064

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics