Silkworm Genome Informatics Database

Gene

KWMTBOMO07186

Pre Gene Modal

BGIBMGA010390

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_dachshund_homolog_2_[Bombyx_mori]

Location

Bomo_Chr12(-):7351455-7453331 View in EpiBrowser

Transcription factor

DACH

Location in the cell

Nuclear Reliability : 4.002

CDS

ATGGCTCGACTTGAAAAGTCACCACTCCTCGCCAACGGATACAACGCGCCACCGACGCACCTTGGTCCTATGGGCTTCATGCACCAGCACGCTCTCATGTCTCCCGGAATGCCTCATCACGGCGTGCCCAGACCGGACGGCTCCATCATTAAAGGCCAACCAATGCACAACATGGAAGCATTAGCAAGATCTGGTATATGGGAGAATTGTAGAGCGGCATATGAGGACATCGTAAAGCATCTCGAAAGATTGCGTGACGAAAGAGGCGATATGGAACGAGTTATGGCGATGGATAAAGCTCGCGAAGGATCGCATAACGGTTCATCGCCAGGACATAGTCCGGTGCTGAACTTATCTAAGTCCGGATCGGGGGGTGATCGCGAACGTTCTGATCGGAACGACCGTGAGCGCGGCGAGCGAGGCGACGGCTCCGCCAGTGGCCGCAGCTCAGCAGCGTCACGCCGCACTCCGCAGCCGCCGAGGATGCCTTCGACAGCCACAGCCGCTGTCTCCCCTCGCTCGCACTCCGATGACAGCGACGCACCCCTTTCCGACCAGGACGACCACAATGTCAAAGACGAAGATGAAGGGGGAGATATGAGCGACGGAGAGCGCGACATTCCAGCATCGACGTCACCGGCTCCTGTGAGCTACCCGCCCCCCACCGTGACACCAACGTCTGTTCCTGTCGATCCCACTGCTGACACCCTCGTCTCCTCCACCGAGACGTTGCTCAGGAATATCCAGGGCCTGTTAAAAGTTGCCGCAGATAACGCAAGACAACAGGAAAGACAAATCAGTTATGAAAAAGCTGAACTGAAAATGGACGTCCTCAGAGAACGAGAAGTGAAAGATAATCTCGAAAGACAACTTGTCGACGAACAGAAATTGCGAGTGATCTACCAGAAGCGGCTAAAGAAAGAAAGAAAGCAGAGGCAAGTGGTACAAGAACAACTAGACATTGAACTGAAAAGACGACAGAAGATAGAGGAGGCTTTGAAGCAATCAGGAGCGCCGCAGGAAATCCTCAGAATTGTGACTGAGAACCTGTCGCCAGCCGGGCAGGAGCAGGGCCGTCACGAGCGTGAGAACGGATCCGAGAGCAAGCCACCTAGCACGGAGCCCCCCTCGACGTCACCGCCGTTCCAGCGCGACCCCCCTCGCACACCTGACAAGCCGCAATGGAACTATCCTCCCCCTCCCGTCGACATCATGAGCGGTGGAGCTGCATTCTGGCAAAATTACTCTGAGTCCTTGGCGCAGGAGCTGGAAATGGAACGCAAATCTCGACAACAGGCGATGGAACGTGATGTGAAAAGTCCTTTGTCGGACCGCGCCGGCTATTACAAGAACTCAGTGTTGTTCAGTTCGGCCACTTAG

Protein

MARLEKSPLLANGYNAPPTHLGPMGFMHQHALMSPGMPHHGVPRPDGSIIKGQPMHNMEALARSGIWENCRAAYEDIVKHLERLRDERGDMERVMAMDKAREGSHNGSSPGHSPVLNLSKSGSGGDRERSDRNDRERGERGDGSASGRSSAASRRTPQPPRMPSTATAAVSPRSHSDDSDAPLSDQDDHNVKDEDEGGDMSDGERDIPASTSPAPVSYPPPTVTPTSVPVDPTADTLVSSTETLLRNIQGLLKVAADNARQQERQISYEKAELKMDVLREREVKDNLERQLVDEQKLRVIYQKRLKKERKQRQVVQEQLDIELKRRQKIEEALKQSGAPQEILRIVTENLSPAGQEQGRHERENGSESKPPSTEPPSTSPPFQRDPPRTPDKPQWNYPPPPVDIMSGGAAFWQNYSESLAQELEMERKSRQQAMERDVKSPLSDRAGYYKNSVLFSSAT

Uniprot

A0A3S2P1K3 A0A2A4K056 A0A2A4K1Y9 A0A2A4K1V8 A0A212EM82

Pubmed

22118469

EMBL

RSAL01000003 RVE54743.1 NWSH01000298 PCG77651.1 PCG77652.1 PCG77650.1 + More
AGBW02013867 OWR42602.1

Proteomes

UP000283053 UP000218220 UP000007151

Pfam

PF02437 Ski_Sno

Interpro

IPR009061   DNA-bd_dom_put_sf        + More
IPR003380   SKI/SNO/DAC
IPR037000   Ski_DNA-bd_sf

SUPFAM

SSF46955 SSF46955

Gene 3D

3.10.260.20

ProteinModelPortal

A0A3S2P1K3 A0A2A4K056 A0A2A4K1Y9 A0A2A4K1V8 A0A212EM82

KEGG

101745682 no KO assigned | (RefSeq) dachshund homolog 2

GO

Length:

459

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00956

Exp number, first 60 AAs:

0.00956

Total prob of N-in:

0.00152

outside

1 - 459

Pi

186.913374

Theta

166.850973

Tajima's D

-1.392088

CLR

0.55383

CSRT

0.0769961501924904

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics