SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07161
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 3.112
 

Sequence

CDS
ATGTCTGGGGGGACATCACCCCCCATAATCAGCACCCCCGGCCCGTCCCGTAAGGGACGCCAAGTTATGACGAGTCTGAGATTCAGACCTTCACCAGCAACCCGTACAGTCTCGATGGGACTCGGGACGGACAGCCGGCCCGGGCCTCCGGTCGCGGCCCAGAGGACTCTGAGGATCGAACCGGAGGAAGATATCCTTCCCCCGTTGACCGATCCCTCTGGGCCCTCTCGGCCGCGGAAGAAGGCCAGGTCCGAGTCCGACCGAGGCTCATCGAGCGAAAAGGACAAGCGTCCAAGAATAGGCCCCTCGTCTAGATCGGAGGGAGAGGAGAGTGCGACCACGTCCTCTGCACATTCCTCAACCGAATCGGTCACTCCCTCCTCATCTAGGTCCTCGTCCCCCTCTGGGAGTCCAATCCCAGCCCAACCAATTCCGAAGCCTAGGGCTCCCGCCAGGACAGGGACAGCCCTAAGGCAAGTACGATCCCCTCCTCGCTCTCCTTCCCCAACGCTATCTCCAATCCCGGTAGACTCAACCCGAGGTGCCCCCGCCCTAAGCGGCACGGCGGGCAACCTGGACTCCACCAGGTATCCCTACCGCCCAGAGGACTTCCCAATCCTCACGAGTCCCTCCCCGAGGCCGAAGGGTCGCGCCCAGGAGGAACTGCGCCGACACCCGCCAATTATGGTGGAGGCCCTTCCAAATTGGTCCCGCCATATGGCGGCCATTAGGGAGCGCCTGGGCCGCGCACCCTCGGCGCGACCCTTCGGCGCCGGCTTTAGATTTCTGCCGACGTCGGCTGAGGAGTATAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGACGGTACCATTAAATGGTACTGCTACGCCCTGGCGGAGGAGATGCCTTCGAAGGTGGCGGTCCGGGGCCTCCCTGCCGACACCGACGAGGCAGAAATCATCAATGCCCTGAAGGAGCTGGGATTCCCGGCTCGATACGCCAGGTGCATTAGGTCCCAGAGAGGGCGTCCGGGATGCGTGTTTCACGTAGCCCTGGACCACCTCTCGAAGGACGACCTCGCCCGCTTGTACGCAGTCAACGAACTGCTGTACCTGCCGGGGGTGACGGTCGAGGGATGGCGTCCGATCCGAGGGCCTGCGCAGTGTCATCGCTGCCAGGCCTTCGGACACGCCTCCTACAACTGTCATCGTGCGGTCCGTTGCGTAAGGTGTGCCGGGGAGCACATCGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCGTTTTCCTGCGCCAACTGCGGGAAGGACCATGCCGCCGTCGACAGACGGTGTGCGGTCTTCCGCAAGCGGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCTGCCCCACAGGCGCCTCGGGCCGGGAGTACAGCTCTTCCGGCTTCAGTACCTGTAGCAAAAGGGAAGGGGAAGGGGAAAGGGAAAACTTCCCAGCCCCCTCCCTCTTCCCACTCCGCTCCGTCTGCGGTGGTGGTGGAGGCACTGCCATCGGCGTCTACGCTGATGGCACAGGCCAACCCGCCACGGCAGTCAATGAAAGTCCAACCTACTCCTGCTCCCCGTGGTCGCACTTCTGCTGGTGCTCCCACAATATCCCGTCCGACTAGCGGCATTACGACCCTAAACAAAAATAGGGAAAAAAACAGGAGGAAAAAACTAAAACGGAAAATAAGGAAAAGAGAGGAACGGGAGAATGCAAATGCAAACGGAGACATTCCGGTGCCTACAGTGCAGAATTCTGCACCACAACCAACCGACCCAGAGAACATGGAGGTCACAGAAAACTCCACTCCGGCCCATACGATACCAAGCCAACCATTGCCCTCGGCCCATTCGGCTGATGTGACCACTACTGCCAACATAAATAATTTGCCCCCCCTCCCCCCCCGCCCACAGCGCGAGCGGCGCAGCGGTCGGCAGGCCTCCCAGCCTGCCGGTTTTGCTGCCTGGCTGCTCACATTGTGGGAGAAATTGTCCGAGGAGCTGCGCATCATTTATTGGAACCCCGACGGGATAAAGTCCCGAAAGAACGACCTGCTTGTTCTCGCCCGGGAGTACAACCCAGAGGTTGTGCTCCTGGGCGAGACCAAGCTTCGTCCTCAGGATGCGTTCAGGATTCCTAACTATTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTCGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTTCACCCTGAGGACATAAGACGGGCCCTGAATCACGACAGCCGCCCAGCCCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTTAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACACACATCCCGACCGCCGCGCGCTATCAGCCCGATGTGCTGGATGTGTGTGTGCACAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTGTCCTGGTGACACTGGGAATGGGGCTTACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTGATTCAGGACCCCAACACCCCTGATGGGGTCGACGATGCGGCAACCCGCCTTGTTGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAGGCGAATATTCGCCGGAAGAGGGGCTTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATAAAGCGCGAGCTTAATGAGCTGGAAGCGGAGCTGGCGACAAAGATTAGCACCTTTAGGGGCTATGCCTGGCAGGAGAGGATCGAGGAGGCCCGCGAGGACCCCTCTTCAGTATCCCTCCACCGGCTTTGTCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATATCCTGGCCGAAATGCTGGAGCGGCAGTTCGCTCCTAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATCTCATCACTCCCAGCGAATTGCGCCTCATCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCTTTTTTCCACTTCCCTGAAACGGTCGTGTCATATATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGACAGGAGAAATCCCTCCAGTTATCGTCCGATCACGTTGCTGTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGATGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGTAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCGCAGGGGAGCGTCCTGGCACCATTCCTCTACGCTCTCTATACCAACGATATTCCCACGCTCGAGGGCAACCTACAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGTTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATTCTCTTCGGTCCAGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCATGTCGGCGTTGGCGGCAGCTCGCTATGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGAGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTAGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG
Protein
MSGGTSPPIISTPGPSRKGRQVMTSLRFRPSPATRTVSMGLGTDSRPGPPVAAQRTLRIEPEEDILPPLTDPSGPSRPRKKARSESDRGSSSEKDKRPRIGPSSRSEGEESATTSSAHSSTESVTPSSSRSSSPSGSPIPAQPIPKPRAPARTGTALRQVRSPPRSPSPTLSPIPVDSTRGAPALSGTAGNLDSTRYPYRPEDFPILTSPSPRPKGRAQEELRRHPPIMVEALPNWSRHMAAIRERLGRAPSARPFGAGFRFLPTSAEEYRAVQAYLSEASARDGTIKWYCYALAEEMPSKVAVRGLPADTDEAEIINALKELGFPARYARCIRSQRGRPGCVFHVALDHLSKDDLARLYAVNELLYLPGVTVEGWRPIRGPAQCHRCQAFGHASYNCHRAVRCVRCAGEHIVADCPRPRDGPFSCANCGKDHAAVDRRCAVFRKRARMMGVTVPPPAPQAPRAGSTALPASVPVAKGKGKGKGKTSQPPPSSHSAPSAVVVEALPSASTLMAQANPPRQSMKVQPTPAPRGRTSAGAPTISRPTSGITTLNKNREKNRRKKLKRKIRKREERENANANGDIPVPTVQNSAPQPTDPENMEVTENSTPAHTIPSQPLPSAHSADVTTTANINNLPPLPPRPQRERRSGRQASQPAGFAAWLLTLWEKLSEELRIIYWNPDGIKSRKNDLLVLAREYNPEVVLLGETKLRPQDAFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNHDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPVLVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPDGVDDAATRLVDSIRGAIDQATTLVPSGGPRGILPAHLKANIRRKRGLRRLWATTRCPRIKRELNELEAELATKISTFRGYAWQERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADILAEMLERQFAPNDSAPSEAAFHQSVEESVASLLSSPVPPLGDGDLITPSELRLIIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRMSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPFLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHAMSALAAARYARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAAAWYHLIPQGMRERLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Summary

Uniprot
ProteinModelPortal
PDB
6AR3     E-value=0.000294812,     Score=110

Ontologies

GO

Topology

Length:
1574
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02005
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1574
 
 

Population Genetic Test Statistics

Pi
205.838602
Theta
197.852497
Tajima's D
0.597876
CLR
19.860914
CSRT
0.539673016349183
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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