Silkworm Genome Informatics Database

Gene

KWMTBOMO06982 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010496

Annotation

dorsal_1b_[Spodoptera_litura]

Location

Bomo_Chr12(+):1037752-1080015 View in EpiBrowser

Transcription factor

RHD

Location in the cell

Nuclear Reliability : 3.809

CDS

ATGGACATCGGCGGAGACGCCGGTCTACCGATAGGTATTGCAGAACAAAATGACCCCAATCAACCTAACGAATTGAATATTAATGATGTTTTTGAGGCCATATCGCTCGCGGATCCCACGTTCGGCGAGGGCCCTCCTCCTGTTGCCTTAGAGAACATGGCGAGTCAATCCGCGCCCCCGCGAGCACCAAGCGTGGTAATAGTCGAGCAACCAGCCAGCAAAGCCCTCAGATTCCGGTATAAATGCGAGGGCCGGTCGGCGGGCTCGCTCCCGGGCGTGTCCAGTACTCCGGAGAACAAAACTTATCCTACAATCAAGATATGCTCTTACAAGGGACCGGCCACCATAGTCGTGTCCTGCGTCAACAAGGATCCCCCGTTTAAACCGCACCCGCACAACCTGGTGGGGCGGGAGCGCTGCGACCGCGGCGTGTGCTCGGTGCGCACCGACGTCACGGAGGACAACAACGAGTACCAGTTCAGGAACCTTGGGATACAATGCGTCAAGCGCAAGGACATCGTCGCCGAGCTGCGCCTCCGGGAGGAGCTCAGGGTGGACCCCTTCAGGACGGGGTTCGACCACCGCTCGCACACGCAGAGCATCGACCTCAACGCGGTGCGGCTCGCCTTCCAAGTGTTCGTGCCGGACGGCGCCGGGCGCATGCGCCGGCCGCTGCCCGCCGTCGTGTCCGACATCATCTACGACAAGAAGGCCATGAGCGACCTCCTCATCATGCGCTCCTCGCACTGCTCCGGCACCATCCGCGGCGGCACGCAGGTCATCCTGCTCTGCGAGAAGGTATCGAAAGAAGACACGGCGGTGATATTCTACCAGGAGGTGAACGAGCAGATAGTGTGGGAGGAGACCGTGACGCCGTCCTACGTGCACAAGCAGGTCGCCGTGGTGTTCAACACGCCGCCCTACCGCGACCCCCAGCGCGACGAGCACGTCACCGTACACTTCCAGCTGAAGAGGTTGACGGACGACGCGCGGAGCAACTCCTTCGCGTTCGAATACATCCCGGACTTCCGAGGTACCACTCGCCGTAAGCCGCCCCCGGACCTGTCCTTCCTCTCCCTTCTCCTCGCTGAGAAACGCGACACCAATAATAACAACAAGGATGAGGCCGTCTCCGTCCCCTCTTCCCCCGACCCCGTACCCTCGCCCCCGCCCCCCGACCCCGAGCCCGCCGCCGCCGAGACTAACGGACATGCGGAGCCGCACGAGAAGAGCCTCGACGATCTGCTGGAGCAGGTCGCCGAGCTCGACGAGATCTACTCTGAGAGCCGCAGTCGCCTGCAGCGCGCCGCCGACGCCGCCGACGCCGAGACCGACGCCGACGATTTCAACGACGCCGGCACCTACACCAGCCTGCAGCTCGCTTTCAAGAACCCGCTGCCCATCGCCGAGCCCGAGCCGCCGCCCTACGAGGACGTGCACGTGCAGACGTTTCGCGGCCCCATCGTCGAGTTCACGCCCTTGAAGCGCGACACGGACGAGGCGCCCCCCCTGCCCCCCAAGCGCGTCCGCAAGTCCGTCTCCTCGGAGTTCAGGTCCAGCCAGACGTCCGTGGAGAGCGCGGCGCGGCCGGCCCGCCTGCCGCCGCCCGACGAGAAGCTGTCGGCGGCCCGGAGCGAGCCGGCGCTGCCGCCCGCCAAGAAGCGCTCGTTCTTCTCGCGGCTGTTCCGGCGGCGCGACAAGTCCCCGGCGCCCAGCGTGCAGGAGGCGCGCGCGCGGCCGGTGGGGCGCTCCGTGAGCAGCGTGTCGGGGCAGCGGCCGGCGCGCTGGGCGGCGGGGGGCGCGGCGGGGGGTGCGGGCGGGGGGCTGCGCGCGGCGGACAGCGTGACGCACGTGTCGCTGCACGAGGACGTGTCGGTGTGCGCGGCGCCGCCGGCGGACGCGATCCTGGTGGCGGAGAGCGTGCTGGCGCTGGACGCGTCGTCGTTCCGGCGGCTGCAGGACGAGCTGGAGCTGACGGAGGCGGAGCACTACGCGCTGTACATGGCGCTGGCGCCGCGAGCCACCGCGTCCGAGTTCGACGACCAGAGCTCGTACTACTCCCCGCTGGACGGGAGCAACTTCCTTCATTCAAATTACATATTGGGTAAAAAGCGGAAGACCAAAATGCCATTAATGGCCGCGTATGAGCAAGAAAGGACCTTCCAGGAGCAGATGCCGATCAAGGCGGAGCCCAGAGAGAAGTCGCCGCACCACGCCACGTCGCCCTACGGCGCGTACCCGCCCTACAGCGACCCGAATTGGATGGTTCCCCCGGAGCAGATGCGAACGATACCGGACCTCGCCGTACCGGCCGCTACCAACATGGACACCTTCGCCGACATGGCGTGGAGCAACGTGCCGTATGGACAGGGCCTCCAGCCGCTGCAGCCCGGTGCCAACGTCATGCACTCCCCCCACTCCCTGTCCCCCATGCACAGGGGGCAGTCCGTGTCCCCCATGCAGGACCCCCAGTGCGGCTCCCCCATGCACGGCGGCCCCTGCGTGTCCCCCATGCACGGCGGCGCCTGCGTGTCCCCCATGGTCGGCCCGATGATGCAAGTCGGGTCTACATCGCCCAACATGCAACACAACACTTATAATCACCTGCCCCAGGGCGCGGAGGCGGACGGCGCCGGGACCACGTTCTCCGCCCAGTTCCTTGACCGCGAGCCCATACTCAACTCCAGCGAGTTCCGATCCCTCCTCGGGGGGGACGGGAACATGCTCTCTGCCGACCTCAACAAGCTCTCCACAAGCGACCTCCTGCTGTGA

Protein

MDIGGDAGLPIGIAEQNDPNQPNELNINDVFEAISLADPTFGEGPPPVALENMASQSAPPRAPSVVIVEQPASKALRFRYKCEGRSAGSLPGVSSTPENKTYPTIKICSYKGPATIVVSCVNKDPPFKPHPHNLVGRERCDRGVCSVRTDVTEDNNEYQFRNLGIQCVKRKDIVAELRLREELRVDPFRTGFDHRSHTQSIDLNAVRLAFQVFVPDGAGRMRRPLPAVVSDIIYDKKAMSDLLIMRSSHCSGTIRGGTQVILLCEKVSKEDTAVIFYQEVNEQIVWEETVTPSYVHKQVAVVFNTPPYRDPQRDEHVTVHFQLKRLTDDARSNSFAFEYIPDFRGTTRRKPPPDLSFLSLLLAEKRDTNNNNKDEAVSVPSSPDPVPSPPPPDPEPAAAETNGHAEPHEKSLDDLLEQVAELDEIYSESRSRLQRAADAADAETDADDFNDAGTYTSLQLAFKNPLPIAEPEPPPYEDVHVQTFRGPIVEFTPLKRDTDEAPPLPPKRVRKSVSSEFRSSQTSVESAARPARLPPPDEKLSAARSEPALPPAKKRSFFSRLFRRRDKSPAPSVQEARARPVGRSVSSVSGQRPARWAAGGAAGGAGGGLRAADSVTHVSLHEDVSVCAAPPADAILVAESVLALDASSFRRLQDELELTEAEHYALYMALAPRATASEFDDQSSYYSPLDGSNFLHSNYILGKKRKTKMPLMAAYEQERTFQEQMPIKAEPREKSPHHATSPYGAYPPYSDPNWMVPPEQMRTIPDLAVPAATNMDTFADMAWSNVPYGQGLQPLQPGANVMHSPHSLSPMHRGQSVSPMQDPQCGSPMHGGPCVSPMHGGACVSPMVGPMMQVGSTSPNMQHNTYNHLPQGAEADGAGTTFSAQFLDREPILNSSEFRSLLGGDGNMLSADLNKLSTSDLLL

Uniprot

A0A059XSS5 A0A194QPD8 A0A2H1VZL5

Pubmed

26354079

EMBL

KJ576788 AIA24467.1 KQ461194 KPJ06840.1 ODYU01005429 SOQ46268.1 + More

Proteomes

UP000053240

Pfam

PF00554 RHD_DNA_bind + More
PF16179 RHD_dimer

Interpro

IPR032397   RHD_dimer        + More
IPR037059   RHD_DNA_bind_dom_sf
IPR008967   p53-like_TF_DNA-bd
IPR013783   Ig-like_fold
IPR011539   RHD_DNA_bind_dom
IPR000451   NFkB/Dor
IPR002909   IPT_dom
IPR014756   Ig_E-set
IPR030492   RHD_CS

SUPFAM

SSF81296 SSF81296 + More
SSF49417 SSF49417

Gene 3D

2.60.40.10 2.60.40.340

ProteinModelPortal

A0A059XSS5 A0A194QPD8 A0A2H1VZL5

PDB

1BVO E-value=8.10637e-55, Score=544

KEGG

692440 K09254 c-Rel proto-oncogene protein | (RefSeq) Dorsal, BmRel, Rel; embryonic polarity protein dorsal

PATHWAY

04624 Toll and Imd signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0003677 GO:0005737 GO:0005634 GO:0003700 GO:0006355 GO:0005515 GO:0004319 GO:0004320 GO:0016295 GO:0016296

PANTHER

PTHR24169

Length:

923

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00152

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 923

Pi

201.635482

Theta

171.956792

Tajima's D

-1.596716

CLR

0.609042

CSRT

0.0500974951252437

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	AMSDIIIMR	100.00	0.012
26280517	TDTSNHHHIFVGDISPEIETNIIR	100.00	0.012
28467696	TDVSDVNSSKDAQDESR	100.00	0.012
26280517	SNPIHNINNAFNVAEEK	100.00	0.015
25044914	SNQYAAAITNWK	100.00	0.015
28467696	SNQWFGATITSTGR	100.00	0.015

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics