Gene

KWMTBOMO06340

Pre Gene Modal

BGIBMGA011906

Annotation

PREDICTED:_zinc_finger_protein_287-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(+):5051007-5054727      View in EpiBrowser

Full name

Zinc finger protein      

Transcription factor

zf-C2H2

Location in the cell

Extracellular   Reliability : 1.517 Mitochondrial   Reliability : 1.254 Nuclear   Reliability : 1.644

CDS

ATGATCACCCACAACGCGTCCTCGCTGCTGTACTGTCATCACTGCGACATGAACTTCAAGAATGAGATGTCCTACTATCAACACATGAAGTACAACTTAAAGCACGTGGACCCGGCCAAGTTGAAGTACGCGTGCGAGCTTTGCGACAAGAAGTTCGTGAAGGCGGCGCGGCTGGAGGAGCACAACATGGCGGTGCACCTGAAGATAGCGCCCATCAGGTGCTCCGTGAGCGGCTGCGAGTTCTGGTTAGTGGTTACCGCTTTCCCACTCCGTAACCCGGATGAAGCTCGTACGGCTGTCTTCACTGAACTGCCCATGGACCTACAACAGCTTCGTGCTTCGAGAAATGTGCATTGTCTAACGGTGTGCGGTGGGGTGCTCCGACAGGCGTGTCCGTCCCGCGCGGCGCTGCGCACGCACACGCGCCGCACGCACCGCCTCGCACGCGCGCTGCGGAACCACGTGTGCCACGCCTGCGGGAAGGCCTACACGACGAAGAAGACTCTGGAGGGTCACGTGAGGTCGCACACCGGCGAGAGGCCCTTCGCGTGCACGCGCTGCCCCTCGACCTTCCGATACGAAGCGGCCCTGTACAACCACAACAAGCTGGTGCACGCGGCGCGGCAGAAGACGTAG

Protein

MITHNASSLLYCHHCDMNFKNEMSYYQHMKYNLKHVDPAKLKYACELCDKKFVKAARLEEHNMAVHLKIAPIRCSVSGCEFWLVVTAFPLRNPDEARTAVFTELPMDLQQLRASRNVHCLTVCGGVLRQACPSRAALRTHTRRTHRLARALRNHVCHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFRYEAALYNHNKLVHAARQKT

Uniprot

H9JQV0   A0A2Z5UIX5   S4PJM9   A0A0N1IGS5   A0A2W1BCQ2   A0A194Q233   + More
A0A212FHB4   A0A2W1BK83   A0A2A4JBW6   A0A1E1W6H5   S4NN42   A0A3S2L580   A0A182H2I3   S4P3B4   A0A3B5QPB5   A0A093CNF3   A0A087RIE5   S4PEZ1   A0A091UHA1   A0A091UZZ5   A0A091JHV1   A0A091MSZ2   A0A2S2QGQ3   A0A212FA07   A0A0M8ZTD5   A0A2S2RAQ4   A0A3M0J1H9   A0A3N0XTP8   A0A2H8TS77   A0A3P8YUU6   A0A3Q0QQW1   A0A0R3NTL7   A0A2K5CH22   A0A0R3NZU2   A0A2K5CGN1   A0A2S2NES9   A0A2S2PUJ8   A0A1A8F472   F7DDX2   A0A2M4ANI0   Q17EB7   A0A2K6RSC8   A0A2K6T8D7   A0A2J7Q3D8   A0A2K6KVP8   A0A2K6T8G2   A0A1L8FUH6   I3ISW0   J9KZZ3   A0A2M3Z7M1   G1T0S6   A0A1Q3F616   A0A067R2L9   A0A146SQW6   A0A1E1WGE7   A0A067RB21   A0A067QTB7   A0A3B3XAG2   A0A091SA01   A0A3B5MEF6   S4RNR2   A0A3N0XL66   A0A087YFY4   A0A096M3B7   A0A1L8FUD1   A0A087YRC2   X1WDP3   A0A3Q0EI63   A0A3Q0FZ37   A0A1I8G8R8   A0A2I3M7H5   A0A3B3HP97   A0A3B3XAI0   A0A315VR43   A0A3N0XTL5   A0A1W4XSB9   A0A3Q3VIH3   A0A146NHQ5   H9IWS1   A0A2S2P8U5   A0A2K5Y5V0   V3ZCA3   A0A1Y1NHK6   K1QRN9   A0A3B4Y3M5  

EC Number

2.1.1.-

Pubmed

19121390    23622113    26354079    28756777    22118469    26483478    + More
23542700    25069045    15632085    17994087    17495919    17510324    25362486    27762356    23594743    21993624    24845553    26392545    17554307    29703783    23254933    28004739    22992520   

EMBL

BABH01028690    AP017511    BBB06832.1    GAIX01004880    JAA87680.1    KQ460400    + More
KPJ14980.1    KZ150132    PZC73042.1    KQ459564    KPI99627.1    AGBW02008515    OWR53125.1    KZ149995    PZC75449.1    NWSH01002068    PCG69256.1    GDQN01008479    JAT82575.1    GAIX01014096    JAA78464.1    RSAL01000142    RVE46032.1    JXUM01105361    JXUM01105362    JXUM01105363    KQ564960    KXJ71510.1    GAIX01006514    JAA86046.1    KL250097    KFV17390.1    KL226382    KFM13249.1    GAIX01006840    JAA85720.1    KK434618    KFQ89906.1    KL410406    KFQ96594.1    KK502095    KFP20604.1    KL371030    KFP80486.1    GGMS01007670    MBY76873.1    AGBW02009535    OWR50564.1    KQ435896    KOX69243.1    GGMS01017876    MBY87079.1    QRBI01000194    RMB94794.1    RJVU01062164    ROJ30457.1    GFXV01005269    MBW17074.1    CH379060    KRT04545.1    KRT04544.1    GGMR01003061    MBY15680.1    GGMR01020438    MBY33057.1    HAEB01007613    SBQ54140.1    GGFK01009023    MBW42344.1    CH477283    EAT44862.1    NEVH01019068    PNF23096.1    CM004476    OCT75229.1    FP102097    ABLF02037694    ABLF02037696    GGFM01003687    MBW24438.1    AAGW02056300    GFDL01012076    JAV22969.1    KK852956    KDR13253.1    GCES01103354    JAQ82968.1    GDQN01005067    JAT85987.1    KK852812    KDR15850.1    KDR13254.1    KK946623    KFQ54887.1    RJVU01070029    ROI63298.1    AYCK01004920    AYCK01001268    OCT75202.1    BX004964    AHZZ02014469    NHOQ01001253    PWA25544.1    RJVU01061403    ROJ36682.1    GCES01155405    JAQ30917.1    BABH01020960    GGMR01013264    MBY25883.1    KB202656    ESO88688.1    GEZM01002437    JAV97259.1    JH816592    EKC24221.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000283053    + More
UP000069940    UP000249989    UP000002852    UP000053286    UP000053283    UP000053119    UP000053105    UP000269221    UP000265140    UP000261340    UP000001819    UP000233020    UP000002280    UP000008820    UP000233200    UP000233220    UP000235965    UP000233180    UP000186698    UP000000437    UP000007819    UP000001811    UP000027135    UP000261480    UP000261380    UP000245300    UP000028760    UP000189704    UP000189705    UP000095280    UP000028761    UP000001038    UP000192223    UP000261620    UP000233140    UP000030746    UP000005408    UP000261360   

PRIDE

H9JQV0    H9IWS1   

Pfam

PF00096   zf-C2H2        + More
PF05605   zf-Di19
PF06459   RR_TM4-6
PF08454   RIH_assoc
PF00520   Ion_trans
PF07776   zf-AD
PF01352   KRAB
PF04548   AIG1

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
IPR008598   Di19_Zn_binding_dom       
IPR005821   Ion_trans_dom       
IPR009460   Ryanrecept_TM4-6       
IPR013662   RIH_assoc-dom       
IPR011992   EF-hand-dom_pair       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR003656   Znf_BED       
IPR017125   Znf_PRDM5-like       
IPR011017   TRASH_dom       
IPR017114   YY-1-like       
IPR006703   G_AIG1       
IPR027417   P-loop_NTPase       

SUPFAM

SSF57667   SSF57667        + More
SSF47473   SSF47473       
SSF109640   SSF109640       
SSF52540   SSF52540       

CDD

cd07765  KRAB_A-box

ProteinModelPortal

H9JQV0   A0A2Z5UIX5   S4PJM9   A0A0N1IGS5   A0A2W1BCQ2   A0A194Q233   + More
A0A212FHB4   A0A2W1BK83   A0A2A4JBW6   A0A1E1W6H5   S4NN42   A0A3S2L580   A0A182H2I3   S4P3B4   A0A3B5QPB5   A0A093CNF3   A0A087RIE5   S4PEZ1   A0A091UHA1   A0A091UZZ5   A0A091JHV1   A0A091MSZ2   A0A2S2QGQ3   A0A212FA07   A0A0M8ZTD5   A0A2S2RAQ4   A0A3M0J1H9   A0A3N0XTP8   A0A2H8TS77   A0A3P8YUU6   A0A3Q0QQW1   A0A0R3NTL7   A0A2K5CH22   A0A0R3NZU2   A0A2K5CGN1   A0A2S2NES9   A0A2S2PUJ8   A0A1A8F472   F7DDX2   A0A2M4ANI0   Q17EB7   A0A2K6RSC8   A0A2K6T8D7   A0A2J7Q3D8   A0A2K6KVP8   A0A2K6T8G2   A0A1L8FUH6   I3ISW0   J9KZZ3   A0A2M3Z7M1   G1T0S6   A0A1Q3F616   A0A067R2L9   A0A146SQW6   A0A1E1WGE7   A0A067RB21   A0A067QTB7   A0A3B3XAG2   A0A091SA01   A0A3B5MEF6   S4RNR2   A0A3N0XL66   A0A087YFY4   A0A096M3B7   A0A1L8FUD1   A0A087YRC2   X1WDP3   A0A3Q0EI63   A0A3Q0FZ37   A0A1I8G8R8   A0A2I3M7H5   A0A3B3HP97   A0A3B3XAI0   A0A315VR43   A0A3N0XTL5   A0A1W4XSB9   A0A3Q3VIH3   A0A146NHQ5   H9IWS1   A0A2S2P8U5   A0A2K5Y5V0   V3ZCA3   A0A1Y1NHK6   K1QRN9   A0A3B4Y3M5  

PDB

3W5K     E-value=1.31238e-06,     Score=121

KEGG

101736035    no KO assigned | (RefSeq) zinc finger protein 287-like

GO

GO:0003676   GO:0005634   GO:0008270   GO:0005219   GO:0005623   GO:0016021   GO:0003677   GO:0006355   GO:0046872   GO:0000976   GO:0005622   GO:0006470   GO:0006744   GO:0016627   GO:0030145   GO:0015923   GO:0006260  

Length:

211

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02243

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05744

outside

1  -  211

 

 

Pi

268.470149

Theta

168.583347

Tajima's D

1.688161

CLR

0

CSRT

0.820758962051897

Interpretation

Uncertain