Silkworm Genome Informatics Database

Gene

KWMTBOMO06193

Pre Gene Modal

BGIBMGA001778

Annotation

PREDICTED:_zinc_finger_protein_454-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(+):2103511-2112095 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.625

CDS

ATGGACGAATCACCAGAAATCTTGTTAAGAAAATTATGCTGTACATGTTTGAGCAAAGATCGTAAACTTGTTCAATTGACGAAGATAAAAGACGGTGTAAATAATCTATATTCGTTATTATCCATTGATTCTGAGGCCTATCAAGAATGCTTCTACAGGGAAATAATGAGTTTGTTCGTATGTTGGGAATGCAATGCATTTATACGAAGATTGAAGTTATTCAGGCAAAGAGCTTGCAGTGCCCAGAGGCTACTCACGGACATATTGGATGGAAAAATTGATTTTCAAAAACAGAAATCGCTTTCAAGTTTAAGAGTGAATGAAAATCTAAACATAATAAGTGAAAGGTATCCGGAGGAATGTGAAGAATTTATAAATGAAGAACACTGTATTTCAGAATTGAACTTAGATAATATGCCTCTGAAAGATTTGAAAGGATATTTGAGGAGAAAGAAATGTGGTGGAAGTAACAAACCTAGCATCAGGAATTTAGACGAGAAATGCAAAAATCAACCCTACGATAATCAATGTTCGAAGAGTACTTGCAATGTTAGTGCTTGTATGATGGAGTCGAAGAGAGAAGTGAACTCTGAAGGGAGTAGTAACAATGGTGTACAGTACAATGAGACACCATCCAACAATAGATCAGTGAAAACGTCCAAGAGGAAATTAATCCGAACGAAGAAAGACGCGATTAAGAAAAGTAATTTTCAATGCAAATTCTGCGAGATGTCTTTTGAGACGAAGCGGCTGAGGGTCGGGCACTCGAGGCGAGCCCACGCCGAGGGTCTGGCCTGCTCCGTCTGCGGGAAACGCTACCCGTCCAAGTACAGCCTGCTGCAGCACGAGAGACTCCATCGTGGTCCTTTGCCGAGAGAGGAATGTGGGGTCTGTCACAAAATGATCCGCGTGGATCTGGTCAAAGCTCACGCTCGCATTCACGAGGACAGACAGAGTTATGAGTGTTTGAAATGCGATAAGAAGTATGTCAGTAAGGCGTCCTATGAAAATCATTTGAAATTCAGCCGAGCGCACGCGGTCGTCGATGTATTGAAGTACAAGTGTTCTGTGTGTGAGAAAGGCTATAGATCCAAGGGGGAGCTCCGCGATCATGTAAATTATCAGCACTTGGGTCAGAGTCAACACAGCTGTCCAATTTGTCAAAAGCCATTAGCTACGCGTCGTTGCATAACGAGACACATCCGTCGCGCCCATCAGAACATAAAGGAGAACCTTCGAGATAAAATGTGTCAGAAATGCGGGAAGGCTTTTCGGTACAAGAAGTCTTTGAGGGAGCACGAGCTGATACATACAGGCGAAAAGCCGCTGGTCTGCGGCGAGTGTGGCCGAAGATTCAGGCAGGGGGCAGCCCTATACACGCACTGCAGACGCGTGCATCAGAACACACACGACAGAGCCAGACCGACGGCCTAA

Protein

MDESPEILLRKLCCTCLSKDRKLVQLTKIKDGVNNLYSLLSIDSEAYQECFYREIMSLFVCWECNAFIRRLKLFRQRACSAQRLLTDILDGKIDFQKQKSLSSLRVNENLNIISERYPEECEEFINEEHCISELNLDNMPLKDLKGYLRRKKCGGSNKPSIRNLDEKCKNQPYDNQCSKSTCNVSACMMESKREVNSEGSSNNGVQYNETPSNNRSVKTSKRKLIRTKKDAIKKSNFQCKFCEMSFETKRLRVGHSRRAHAEGLACSVCGKRYPSKYSLLQHERLHRGPLPREECGVCHKMIRVDLVKAHARIHEDRQSYECLKCDKKYVSKASYENHLKFSRAHAVVDVLKYKCSVCEKGYRSKGELRDHVNYQHLGQSQHSCPICQKPLATRRCITRHIRRAHQNIKENLRDKMCQKCGKAFRYKKSLREHELIHTGEKPLVCGECGRRFRQGAALYTHCRRVHQNTHDRARPTA

Uniprot

A0A194Q532

Pubmed

26354079

EMBL

KQ459463 KPJ00469.1

Proteomes

UP000053268

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A194Q532

PDB

5WJQ E-value=2.22034e-16, Score=210

KEGG

101737670 no KO assigned | (RefSeq) zinc finger protein 454-like

GO

GO:0003676 GO:0046872 GO:0022857 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

477

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00127

Exp number, first 60 AAs:

0.00067

Total prob of N-in:

0.00091

outside

1 - 477

Pi

322.612313

Theta

167.962634

Tajima's D

2.908054

CLR

0.246889

CSRT

0.974401279936003

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics