Gene

KWMTBOMO06130

Pre Gene Modal

BGIBMGA001684

Annotation

PREDICTED:_zinc_finger_protein_62_homolog_[Acyrthosiphon_pisum]

Location

Bomo_Chr11(-):866867-868324      View in EpiBrowser

Full name

Zinc finger protein      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.991

CDS

ATGTTTTATTTAAAAAAGCATCTAAGAATCATCAGCGAAAAACTCCATAATTGTGAAGTGTGCGACAAAAGCTTTGCACAAGCAGTAGAGTTAAAAAGACATCTAAGAACTCACACTGACAATAAACCTTATGTGTGTGAAGTATGTGATAAAAAGTTTGTGCTAAAATGGCACCTCAAGGTACATCAAAGAACACATACTGGTGAAAGACCTTATGTGTGTGAAGTATGTGATAAAAAGTTTGTGCTAAAATGTCACCTCAAGGTACATCAAAGTACACATACTGGTGAAAGACCTTATGTTTGTGAAGTGTGTGACAAAGGCTTTAAAAGAATTAGTAATTTTAAAAGGCATCAGAGAGTCCATGCCACAGAGAAGCCTTACATTTGTGAAGTGTGCCACAAGATTTTTTTAAGGATGGAGACCTTACAGAGGCATTTAAGTAGACATAGTGGAGAAAAACCTTACATGTGTGAAGTGTGTAAGAAGAGATTTACACACATAGCATACCTGAAACGGCATTTAAGAACCCACACTGAAGATAAACCTTATGTGTGTGAAGTATGTGATAAAAGGTATAGGCTAAAATGCAGCCTCAAGAAACATCACAGAACACATAGTGATGTAAGACCTTATGTTTGTGAAGTGTGTGAAAAAAGCTTTAAAAGCCTTTATGATTTAAAAAGACATCTGAGAACCCACACTGGAGATAAACCTTATGTGTGTGAAGTATGTTATAAAAGGTTCATGCTAAAACACAGCCTCAAGAATCATCAAGTAACACATACTGAAGAAAGACCGTACGTTTGTGAAGTGTGTGACAAAGGCTTTAAAAGCCTTAATAATTTAAAGGGACATCTGGAAACCCACACCATGGAGAAGCCTTACATTTGTGAAGTGTGCCATAGGAGTTTTTCAAGGATGAACAGATTAAAGAAGCATCTAACTAGACACACTGAAGAAAAACCTTACATGTGTGAAGTATGTGATAAAAGGTTCGTGCTAAAACACAGCCTCAAGAAACATCAAATAATACACACTGGTGAAAGAACTTATGTATGTGAAGTTTGTGACAAAGGCTTTATGACCATTCACAATTTAAAAAAACATCTGAGGACCCACACCACGTAA

Protein

MFYLKKHLRIISEKLHNCEVCDKSFAQAVELKRHLRTHTDNKPYVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVLKCHLKVHQSTHTGERPYVCEVCDKGFKRISNFKRHQRVHATEKPYICEVCHKIFLRMETLQRHLSRHSGEKPYMCEVCKKRFTHIAYLKRHLRTHTEDKPYVCEVCDKRYRLKCSLKKHHRTHSDVRPYVCEVCEKSFKSLYDLKRHLRTHTGDKPYVCEVCYKRFMLKHSLKNHQVTHTEERPYVCEVCDKGFKSLNNLKGHLETHTMEKPYICEVCHRSFSRMNRLKKHLTRHTEEKPYMCEVCDKRFVLKHSLKKHQIIHTGERTYVCEVCDKGFMTIHNLKKHLRTHTT

Uniprot

H9IWQ2   J9JZ45   X1WW20   X1WP87   C3YAL2   J9JJ22   + More
J9JSS0   X1WX70   A0A087UEU2   J9JNC1   J9JWR5   A0A2P6K4A5   J9JMS6   X1WUX7   C3XQ44   X1XNT2   X1XQ08   X1WQB0   J9K1Q9   J9JK94   A0A2P6K172   X1XP18   A0A2P6KCW4   J9JNF5   A0A2P6K572   A0A2P6JUN9   A0A087YLI0   A0A2P6KZU1   X1WN76   A0A3B3CS95   J9JJH7   H2YQC6   C3ZDK4   A0A087UF07   A0A2P6K5J1   C3ZDP0   C3Z1W9   A0A3B3C4I9   C3ZDM5   C3ZY69   C3YAK7   C3ZQN5   J9JQB7   C3Z1Y0   C3ZPS8   X1XR32   J9JZF3   J9JKW3   C3ZII5   A0A2P6K6Q8   C3ZDN1   C3ZDL6   C3XQU7   J9KG92   A0A2J7PMM3   C3ZUZ5   J9JPB3   A0A087TAT1   C3ZGR5   J9K4V2   A0A3Q3MXV9   C3ZDJ9   C3XVJ4   A0A2P6K6R3   C3Z1W6   A0A087UBA6   A0A2P6KF50   A0A3B3TYQ7   C3YAI3   J9K3N2   A0A087U2Y4   C3ZPQ0   C3ZDP1   A0A3B3DAR9   J9K2S7   A0A096LQA3   A0A2P6K5T1   A0A3P9HTS6   X1XFU6   J9JXH3   C4A0V9   C3YTY0   A0A3P9HWB1   C3ZDJ6   C3ZDM1   C3ZGR7   A0A087T3V7   C3Y799   A0A2P6KH06   C3Z903   A0A087UHT5   C3YQG0   A0A087V185   A0A3P9J8W2   C3Z579   J9K0J4   A0A096MFL3   A0A3B3C1L2   C3Y9S1   A0A3Q3VVR4  

EC Number

2.1.1.-

Pubmed

19121390    18563158    29451363    17554307   

EMBL

BABH01021016    ABLF02009642    ABLF02029788    ABLF02029797    GG666494    EEN62760.1    + More
ABLF02033404    ABLF02025261    ABLF02038592    KK119509    KFM75881.1    ABLF02025528    ABLF02038588    ABLF02038606    ABLF02038607    MWRG01030637    PRD21150.1    ABLF02038601    ABLF02025523    GG666451    EEN70065.1    ABLF02003804    ABLF02003805    ABLF02003807    ABLF02004643    ABLF02004644    ABLF02020406    ABLF02024472    ABLF02011913    ABLF02022486    ABLF02022489    ABLF02022496    ABLF02022497    ABLF02022499    ABLF02022500    ABLF02063679    MWRG01045277    PRD20076.1    ABLF02024899    MWRG01015784    PRD24168.1    ABLF02040395    MWRG01026172    PRD21467.1    MWRG01157310    PRD17780.1    AYCK01001272    AYCK01001273    MWRG01003147    PRD31847.1    ABLF02005500    ABLF02005501    ABLF02009116    ABLF02009117    ABLF02009118    ABLF02009119    ABLF02060218    ABLF02063036    ABLF02066102    ABLF02066235    GG666612    EEN48810.1    KK119529    KFM75946.1    MWRG01025419    PRD21595.1    EEN48846.1    GG666573    EEN53486.1    EEN48831.1    GG666722    EEN42500.1    EEN62755.1    GG666662    EEN45081.1    ABLF02020710    ABLF02032781    ABLF02047065    ABLF02063720    EEN53497.1    GG666659    EEN45307.1    ABLF02020429    ABLF02030421    ABLF02007945    ABLF02021897    ABLF02057411    GG666627    EEN47710.1    MWRG01023322    PRD22014.1    EEN48837.1    EEN48822.1    GG666456    EEN69542.1    ABLF02037187    NEVH01023973    PNF17581.1    GG666686    EEN43642.1    ABLF02011791    ABLF02011792    KK114337    KFM62220.1    GG666620    EEN48291.1    ABLF02014787    EEN48805.1    GG666468    EEN68120.1    MWRG01023250    PRD22026.1    EEN53483.1    KK119087    KFM74645.1    MWRG01013681    PRD24960.1    EEN62731.1    ABLF02030560    ABLF02030568    KK117904    KFM71723.1    EEN45471.1    EEN48847.1    ABLF02009698    ABLF02018747    AYCK01001268    MWRG01025029    PRD21660.1    ABLF02017959    ABLF02020230    ABLF02020231    GG666831    EEN41572.1    GG666552    EEN56257.1    EEN48802.1    EEN48827.1    EEN48293.1    KK113279    KFM59796.1    GG666489    EEN63727.1    MWRG01012199    PRD25597.1    GG666598    EEN50915.1    KK119857    KFM76924.1    GG666542    EEN57490.1    KL819331    KFM83374.1    GG666582    EEN52436.1    ABLF02030153    GG666492    EEN63327.1   

Proteomes

UP000005204    UP000007819    UP000001554    UP000054359    UP000028760    UP000261560    + More
UP000007875    UP000235965    UP000261640    UP000261500    UP000265200    UP000261620   

PRIDE

H9IWQ2   

Pfam

PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
PF14291   DUF4371
PF00078   RVT_1
PF16622   zf-C2H2_11

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR017126   Znf_PRDM12       
IPR017125   Znf_PRDM5-like       
IPR017114   YY-1-like       
IPR022755   Znf_C2H2_jaz       
IPR025398   DUF4371       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR003656   Znf_BED       
IPR001965   Znf_PHD       
IPR000477   RT_dom       
IPR011017   TRASH_dom       
IPR041697   Znf-C2H2_11       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9IWQ2   J9JZ45   X1WW20   X1WP87   C3YAL2   J9JJ22   + More
J9JSS0   X1WX70   A0A087UEU2   J9JNC1   J9JWR5   A0A2P6K4A5   J9JMS6   X1WUX7   C3XQ44   X1XNT2   X1XQ08   X1WQB0   J9K1Q9   J9JK94   A0A2P6K172   X1XP18   A0A2P6KCW4   J9JNF5   A0A2P6K572   A0A2P6JUN9   A0A087YLI0   A0A2P6KZU1   X1WN76   A0A3B3CS95   J9JJH7   H2YQC6   C3ZDK4   A0A087UF07   A0A2P6K5J1   C3ZDP0   C3Z1W9   A0A3B3C4I9   C3ZDM5   C3ZY69   C3YAK7   C3ZQN5   J9JQB7   C3Z1Y0   C3ZPS8   X1XR32   J9JZF3   J9JKW3   C3ZII5   A0A2P6K6Q8   C3ZDN1   C3ZDL6   C3XQU7   J9KG92   A0A2J7PMM3   C3ZUZ5   J9JPB3   A0A087TAT1   C3ZGR5   J9K4V2   A0A3Q3MXV9   C3ZDJ9   C3XVJ4   A0A2P6K6R3   C3Z1W6   A0A087UBA6   A0A2P6KF50   A0A3B3TYQ7   C3YAI3   J9K3N2   A0A087U2Y4   C3ZPQ0   C3ZDP1   A0A3B3DAR9   J9K2S7   A0A096LQA3   A0A2P6K5T1   A0A3P9HTS6   X1XFU6   J9JXH3   C4A0V9   C3YTY0   A0A3P9HWB1   C3ZDJ6   C3ZDM1   C3ZGR7   A0A087T3V7   C3Y799   A0A2P6KH06   C3Z903   A0A087UHT5   C3YQG0   A0A087V185   A0A3P9J8W2   C3Z579   J9K0J4   A0A096MFL3   A0A3B3C1L2   C3Y9S1   A0A3Q3VVR4  

PDB

5V3M     E-value=1.7087e-50,     Score=503

KEGG

101744162    no KO assigned | (RefSeq) zinc finger protein 28-like

GO

GO:0003676   GO:1900111   GO:0000976   GO:0005634   GO:0046872   GO:0045892   GO:0045893   GO:0043565   GO:0003700   GO:0045944   GO:0008270   GO:0003677   GO:0006357   GO:0000981   GO:0044212   GO:0005654   GO:0010468   GO:0000979   GO:0007417   GO:0000977   GO:0006355   GO:0030246   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

Length:

376

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01454

outside

1  -  376

 

 

Pi

233.769317

Theta

216.105533

Tajima's D

0.435098

CLR

0

CSRT

0.495475226238688

Interpretation

Uncertain