Gene

KWMTBOMO06120

Pre Gene Modal

BGIBMGA001736

Annotation

PREDICTED:_zinc_finger_protein_239-like_[Bombyx_mori]

Location

Bomo_Chr11(+):694605-707052      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.917

CDS

ATGCATAGAATTACAAAGACTAAATTACAAATTATTTACGAGAAACTCACCAATATAAAGATTGAAAATCATGTTCTTCCCTTGCTACTGTGCTACATGTGTCGGAGGAAGCTACAGAATTGTAACGAGCTTATGTTGAAGGCTCTGAACAGCGAAATGTTTTTAGCGGAACTCGGACGTAGTGGAGTTCAGCTCACTGAACAAGTAATTGAGACAAACAGTCACCATGAAAGCTTACTAAGTCAATCAAAAATCGAAACCGTAGAGATACAAGAAGTGTACGTTAAAAAAGAAATTACAGAACAGAATATTAATGAAGATTTATCGAATGACGATGATTTGAAAGATTCACTGAAATACGATTTCAACATAGATGATGGTAATAATGCAACTGACTCGGAAGATGATGTCCCATTAAAAAGTATATTCAAGAAAGACAAAGAAAAACAGGTGCCAAGAGAAATGAGTGAATGTCAGAAAACCAATAGAAGAAGAAGTAATAAGCGAACCGAGCAAAAGATTGACTCTGAAGAAATAAAGCTGAGCAGGGAGGAGCAGATGGAGGCGCTGCTTAAGAGATCCAAGTCCTTGAATTACATTAACTCACCTTTCAAATGTAATTTGTGCTTCAGGGGATTTGTTTTTGAACAGGCTTATGTCAATCACAAGATGAAACACGATCAAGTCAACGGGCCGCACCAGTGTCCCGTGTGCAAGATGCACTACAGGACTCAACGCCACCTGAGGGTTCATTCGGTGACGGCGCACGAGAGACTGTACCGCTGCAACAAGTGTGGTACAATATCGCACACCATGAATCAGGCGAGGGATCATGAGAAGTGGCACAACGGACACACATATGAATGTCTACTGTGCGGAATGAAGTTTAGAAAGCCTACTTCGTACCTGACGCACAAACGCAAAAGGCATCCATCCAAATATATATGCAACTTGTGCGGCGAGAGCTTTATAGGAGCCCACGGACTTCTGATGCACAAGACCAAAGCACACAAATCGAGCGAATCGAATCCCGAGGACGGTTCTCCCGGGGAGGGCTTCTGCGCCGAATGCGACATTCGTTTCACGACCCTCGAAGCCTGGAAGAGACATATGATCTGTTCTATCAACCACCGATACGATAATAGTTTAAAATGTAAGATTTGCAATATAAAGTACAGCAGCGCGGATTCGTTCACGGTTCACATGAAGGAGCACTTGAAGAGTTTGAAGAGGCACCGAGGACCGCCCGGGGACACGGGCCAGACCAAAGTGGCCTGCGACCAGTGCGGCGGGAGCTTCGCGAACAAGTCAAAGCTACAAGCTCACATAAATCGAATGCACTTAGGCATAAAGTACAACAAGGATATCGTGTGCGAAGTTTGCGGGAAAAAGTTCAGCTCGAACGCCTTCCTGCGCTACCACCAGCGGATCCACACCGGCGAGAAGCCGTACTCTTGCGAGACGTGCTCGAGAAGGTTCACCGAGAAGAACCAGCTCCGGATCCACGTGCGCACGCACACCGGCGAGAAGCCGTACTGCTGCATCGTCTGCGGACGGAGCTTCAGCCAGAAGCCGGCCCTGAACCGACATTACCGGACTCACACGGGAGCGAAGCCCTACGAATGTCGGTATTGTTCAAAGAAATTCAGTCAATCGAATTCAATGAACCTCCACGTGAAGACGATACATCTGAAGATGGGCAGAGTGGCAAGTGCGAAGAAAACGGACGTGGATCCGATCGAAGTATTGCCAGAGAAGAAAAATATTTGTGTTTTTGAATAA

Protein

MHRITKTKLQIIYEKLTNIKIENHVLPLLLCYMCRRKLQNCNELMLKALNSEMFLAELGRSGVQLTEQVIETNSHHESLLSQSKIETVEIQEVYVKKEITEQNINEDLSNDDDLKDSLKYDFNIDDGNNATDSEDDVPLKSIFKKDKEKQVPREMSECQKTNRRRSNKRTEQKIDSEEIKLSREEQMEALLKRSKSLNYINSPFKCNLCFRGFVFEQAYVNHKMKHDQVNGPHQCPVCKMHYRTQRHLRVHSVTAHERLYRCNKCGTISHTMNQARDHEKWHNGHTYECLLCGMKFRKPTSYLTHKRKRHPSKYICNLCGESFIGAHGLLMHKTKAHKSSESNPEDGSPGEGFCAECDIRFTTLEAWKRHMICSINHRYDNSLKCKICNIKYSSADSFTVHMKEHLKSLKRHRGPPGDTGQTKVACDQCGGSFANKSKLQAHINRMHLGIKYNKDIVCEVCGKKFSSNAFLRYHQRIHTGEKPYSCETCSRRFTEKNQLRIHVRTHTGEKPYCCIVCGRSFSQKPALNRHYRTHTGAKPYECRYCSKKFSQSNSMNLHVKTIHLKMGRVASAKKTDVDPIEVLPEKKNICVFE

Uniprot

H9IWV3   A0A2A4JVY9   A0A2W1BE97   A0A2A4JVX9   A0A2A4JSJ1   A0A2H1W3X2   + More
H9IWW1   A0A2A4JMX7   A0A2A4JW96   A0A212F5H6   A0A194Q527   A0A194QVL0   A0A212ET42   A0A2H1WS93   A0A2A4JTI5   A0A194Q632   A0A2H1WDF0   A0A0L7LGN8   A0A2A4K955   A0A0N1PFS3   A2ART0   A2ARX1   F6U517   A0A340WRW8   A0A340WM88   A0A340WS90   A0A2J8RYF4   F1SN91   A2ARX0   A0A287B5Z3   A0A2R8MGJ9   G1QL50   A0A2F0BMP4   A0A2D0S0R2   A0A1Y1LIK8  

Pubmed

19121390    28756777    22118469    26354079    26227816    19468303    + More
17495919    30723633    28004739   

EMBL

BABH01020992    BABH01020993    NWSH01000508    PCG75979.1    KZ150164    PZC72671.1    + More
PCG75969.1    NWSH01000652    PCG75007.1    ODYU01006174    SOQ47799.1    BABH01021020    BABH01021021    BABH01021022    BABH01021023    NWSH01000946    PCG73425.1    PCG75968.1    AGBW02010195    OWR48987.1    KQ459463    KPJ00464.1    KQ461181    KPJ07591.1    AGBW02012649    OWR44658.1    ODYU01010673    SOQ55945.1    PCG75008.1    KPJ00465.1    ODYU01007811    SOQ50892.1    JTDY01001260    KOB74361.1    NWSH01000027    PCG80589.1    KQ460882    KPJ11499.1    AL845476    AL845494    NDHI03003638    PNJ13569.1    AEMK02000005    DQIR01144099    HDA99575.1    ADFV01118897    NTJE010341564    MBW04279.1    GEZM01056306    JAV72731.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000000589    UP000002280    UP000265300    UP000008227    UP000008225    UP000001073    UP000221080   

PRIDE

H9IWV3    H9IWW1    A2ARX1    F1SN91    A2ARX0   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

Gene 3D

3.30.40.180    

CDD

cd07765  KRAB_A-box

ProteinModelPortal

H9IWV3   A0A2A4JVY9   A0A2W1BE97   A0A2A4JVX9   A0A2A4JSJ1   A0A2H1W3X2   + More
H9IWW1   A0A2A4JMX7   A0A2A4JW96   A0A212F5H6   A0A194Q527   A0A194QVL0   A0A212ET42   A0A2H1WS93   A0A2A4JTI5   A0A194Q632   A0A2H1WDF0   A0A0L7LGN8   A0A2A4K955   A0A0N1PFS3   A2ART0   A2ARX1   F6U517   A0A340WRW8   A0A340WM88   A0A340WS90   A0A2J8RYF4   F1SN91   A2ARX0   A0A287B5Z3   A0A2R8MGJ9   G1QL50   A0A2F0BMP4   A0A2D0S0R2   A0A1Y1LIK8  

PDB

5V3M     E-value=7.2801e-31,     Score=336

KEGG

101742963    no KO assigned | (RefSeq) zinc finger protein 239-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003677   GO:0006355   GO:0046872   GO:0005975   GO:0030246   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

Length:

593

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04213

Exp number, first 60 AAs:

0.00512

Total prob of N-in:

0.00652

outside

1  -  593

 

 

Pi

248.705436

Theta

139.481662

Tajima's D

2.396151

CLR

10.158844

CSRT

0.935703214839258

Interpretation

Uncertain