Silkworm Genome Informatics Database

Gene

KWMTBOMO06092

Pre Gene Modal

BGIBMGA001704

Annotation

PREDICTED:_zinc_finger_protein_OZF_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(-):231499-245734 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.326

CDS

ATGTATCGATACGGCTTAGTAGAAATATATGAGGATATCACAACTATTCAAATAACTGCAGACGAAAGTAATTATCAGCACTATTTGTGCAGCGTTTGCGCCACACAGCTCATGAAGTGTGCTACCTTCAAAGAGAAATGCCACAGGGCTCAACGTTTAATGAACATGTTAGGTTCGTTACCAATTCAAGAAGTCGACAGAGAAACATACCACTTGAATACACCCCTCGCCGTACACACCTTGCATTCTATGTCTCTGTCCACCCAAGTGGATTACATCAAGGAAGAATATGATAATGTGGAGAATTGTGCATATCTGGATGATTTTAAAGTTATGTCACCAATAAACGAAGAGACGATAGAAACAGAGGACTTAAAAGAAGAAATAGACAGTAAATCCTACGACAATGTGAAGTTGTTTGAGGAAGACATCCATGTCATGATGCTGTCCGAAGAGGAGCAACTAGCCGAGATCCAACGTAGGAAAGAAAGCGTCAACTACAAGTGCTCTTTGTACAAATGCGAGAAATGTTATAAGGGTTTCATGACCGATGTCACATACACCAATCACATGATAAGGCACGATCCGTGCAGCGGCGCGCACGAGTGCGGCATATGCGGCATCCGGCGCGCGTCGGTCCGCGAGCTGCGCCTGCACGCCGCCTCCGCGCACGAGCGGCACTTCCTGTGCGCGCACTGCTCGCACGTCACGCGCTCGCTGCACCGCGCCCGCGAGCACCGCGCCTCGCACGGCGGGTGCCCGCTGTGCCACAAGCGGTTCCTAGGACGGCTCGGCCTCAAGATGCACATGAAGAGGGCGCACGGAGAATGCAAGAAGAGTCTCGAGGAGCACGTGTGCGACGGCTGCGACGTCAACTTCAACAGCGAGGACGCCCTCGAGCGACACCGCTCCGTGCTCAGCGACGTCTCCTGTCAGGACCTGAGATCGTGCGCGGAATGTGGGTTCGGTTTCCAGACTGAGGAGCTGCTGCAGGAGCACGTGGACTCCGTGCACGCCGTGGACGAGACCGCCAAGTGCAGCAAGTGCGACAAGAACTTTGCGAACAAGCGGACGCTGTCGAAGCACATCCAGCGGTACCACCTCGGCAACCTGCGCGCCGTGCGCCCCGCCGAGACCGAGTACGTGTGCGAGATGTGCGGCACCAGGTGCTCGTCCGCGGTGTCGCTGCTCAACCACCAGAGGACCCACACCGGGGAGAAGCCCTACCAGTGCCCGGACTGTCCGAAGAGGTTCAGCGTGTCGCAGGGGCTCCGGATCCACATCCGGACGCACACGGGCGAGAGACCGTTCAAGTGCACCAACTGTCCCAAGGCGTTCAAGAACAAGGCGGCGCTGAACCGACACAACCGGGTGCACACCGGCGTGCGTCCGTACGCGTGCCCGCACTGCCTGAAGGCGTTCTCCCAGTCCAACTCGATGAAGCTGCACGTGTCGACCGTCCACCTCAAGATGCCGGCGCCCTATCGCAACAGAAGGAAGAACAACAGCAGCTAG

Protein

MYRYGLVEIYEDITTIQITADESNYQHYLCSVCATQLMKCATFKEKCHRAQRLMNMLGSLPIQEVDRETYHLNTPLAVHTLHSMSLSTQVDYIKEEYDNVENCAYLDDFKVMSPINEETIETEDLKEEIDSKSYDNVKLFEEDIHVMMLSEEEQLAEIQRRKESVNYKCSLYKCEKCYKGFMTDVTYTNHMIRHDPCSGAHECGICGIRRASVRELRLHAASAHERHFLCAHCSHVTRSLHRAREHRASHGGCPLCHKRFLGRLGLKMHMKRAHGECKKSLEEHVCDGCDVNFNSEDALERHRSVLSDVSCQDLRSCAECGFGFQTEELLQEHVDSVHAVDETAKCSKCDKNFANKRTLSKHIQRYHLGNLRAVRPAETEYVCEMCGTRCSSAVSLLNHQRTHTGEKPYQCPDCPKRFSVSQGLRIHIRTHTGERPFKCTNCPKAFKNKAALNRHNRVHTGVRPYACPHCLKAFSQSNSMKLHVSTVHLKMPAPYRNRRKNNSS

Uniprot

H9IWS1 A0A0N1PIR8 A0A0N1IE84 A0A2A4JS70 A0A2A4JVY9 A0A194QHT0 + More
A0A2A4JVX9 H9IWV3 A0A2A4JMX7 A0A2W1B1S3 A0A194Q527 A0A212F5H6 H9IWW1 A0A194QVL0 A0A1E1WHH4 A0A2A4JW96 A0A3N0Z7M7 A0A1D5RM15 F6YAM1 A0A3P9HTS6

Pubmed

19121390 26354079 28756777 22118469 19468303 17554307 + More

EMBL

BABH01020960 KQ460140 KPJ17512.1 KQ458725 KPJ05381.1 NWSH01000707 + More
PCG74669.1 NWSH01000508 PCG75979.1 KQ458981 KPJ04495.1 PCG75969.1 BABH01020992 BABH01020993 NWSH01000946 PCG73425.1 KZ150681 PZC70388.1 KQ459463 KPJ00464.1 AGBW02010195 OWR48987.1 BABH01021020 BABH01021021 BABH01021022 BABH01021023 KQ461181 KPJ07591.1 GDQN01004610 JAT86444.1 PCG75968.1 RJVU01007076 ROL53958.1 AC114995 AC117621

Proteomes

UP000005204 UP000053240 UP000053268 UP000218220 UP000007151 UP000000589 + More
UP000265200

PRIDE

H9IWS1 H9IWV3 H9IWW1 F6YAM1

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP
PF01352   KRAB

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD
IPR006612   THAP_Znf
IPR038441   THAP_Znf_sf
IPR017114   YY-1-like
IPR001909   KRAB
IPR036051   KRAB_dom_sf

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

Gene 3D

3.30.40.180

CDD

cd07765 KRAB_A-box

ProteinModelPortal

H9IWS1 A0A0N1PIR8 A0A0N1IE84 A0A2A4JS70 A0A2A4JVY9 A0A194QHT0 + More
A0A2A4JVX9 H9IWV3 A0A2A4JMX7 A0A2W1B1S3 A0A194Q527 A0A212F5H6 H9IWW1 A0A194QVL0 A0A1E1WHH4 A0A2A4JW96 A0A3N0Z7M7 A0A1D5RM15 F6YAM1 A0A3P9HTS6

PDB

2I13 E-value=2.37156e-30, Score=331

KEGG

101740309 no KO assigned | (RefSeq) zinc finger protein 260

GO

GO:0003676 GO:0008270 GO:0005634 GO:0003677 GO:0045893 GO:0043565 GO:0046872 GO:0045892 GO:0045944 GO:0003700 GO:0003924 GO:0016020 GO:0000723 GO:0006260

Length:

504

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00442

outside

1 - 504

Pi

173.055024

Theta

158.287424

Tajima's D

0.48833

CLR

0.185868

CSRT

0.51792410379481

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics