Gene

KWMTBOMO05808

Pre Gene Modal

BGIBMGA006943

Annotation

PREDICTED:_transcription_factor_Sp9_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):10553531-10577896      View in EpiBrowser

Full name

Transcription factor Sp9       + More
Transcription factor Sp8      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.105

CDS

ATGCTCGCGGCCCAGTGTAACAAATTGTCAAGTAAATCTCCGCCTCCGCTAGCAGATGCTGCCGTGGGAAAAGGTTTTCATCCCTGGAAGAAAAGTCCTGGTGCACATTCACCACCAAATGCTGGAGCTATTGCTCGCTCACAGGCTCCATCGTGTGGGCCATACGCACGACCACCGACATCTTGCGCTGCCGCGCCATCCTATGGAAATGATCTGTATTTTCCGTCCTCAGGAGATCAACTTCTGGGCAAAAGTGAATCTAGTGCTAGCCTTGGATCTATGTATTCTAGACACCCCTACGAATCTTGGCCTTTCAATGTTGGTGGAGGTGGTGGGAGTAGTGCTTTAAAAGCAGCAGAGATGAGTGGAGTGGGCGCCGTGGGTGGAACTTGGTGGGATGTTCACAGTGGTTGGCTAGACGTTGGTGGACAAATGGCCAACTATGCTGGACAAGATTATTCCCAACTTACACATTCCCTCTCTGGAGGTGCACATTTATTGCCACCCGCGCCACACCTTTTACAAGATGCCTACAAGTCGGTTTTACCGACACAAGGTTCGTTTGGACTACACGGTCCGGGATCACCAGCTCCGCCTGCACAAGCGCCCTCGCCGCGATCGCAACGCCGCTACGCCGGTCGAGCTACTTGTGACTGTCCAAACTGTCAAGAAGCCGAAAGGTTAGGCCCCGCGGGAGCACATTTGCGAAAGAAAAATATACACAGCTGTCACATACCGGGTTGCGGTAAAGTTTACGGCAAAACCTCACACCTTAAAGCACACCTCCGTTGGCACACCGGCGAACGACCGTTTGTCTGTAACTGGCTGTTCTGCGGGAAAAGGTTTACTCGATCCGATGAGTTACAAAGACATCTCCGCACGCACACCGGCGAAAAGAGGTTCGCATGTCCGGTGTGCAATAAGCGGTTTATGCGTTCAGATCACCTAGCGAAGCACGTAAAAACTCACAATGGTGGCAAGAAAGGCAGCTCGGAGTCGTGCTCGGATTCAGAAGAAAACAGCCAAGGCGAGGGCGGAACGGGCAGTCGGTCCCCTGAGCATGGACTCGACGTGAAGCCTAGTGCGCTAGTGTGA

Protein

MLAAQCNKLSSKSPPPLADAAVGKGFHPWKKSPGAHSPPNAGAIARSQAPSCGPYARPPTSCAAAPSYGNDLYFPSSGDQLLGKSESSASLGSMYSRHPYESWPFNVGGGGGSSALKAAEMSGVGAVGGTWWDVHSGWLDVGGQMANYAGQDYSQLTHSLSGGAHLLPPAPHLLQDAYKSVLPTQGSFGLHGPGSPAPPAQAPSPRSQRRYAGRATCDCPNCQEAERLGPAGAHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLAKHVKTHNGGKKGSSESCSDSEENSQGEGGTGSRSPEHGLDVKPSALV

Description

Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos (By similarity).
Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos.

Similarity

Belongs to the Sp1 C2H2-type zinc-finger protein family.

Keywords

Complete proteome   DNA-binding   Metal-binding   Nucleus   Reference proteome   Repeat   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Transcription factor Sp9

Uniprot

H9JBP8   A0A2H1W5V5   A0A2A4JSF7   A0A194QE80   A0A212EUN9   A0A0L7LCE1   + More
A0A194QS81   N6UEW4   A0A1W4WVI0   A0A1W4WU96   A0A1W4WJF4   A0A1Y1M2N8   Q6W2J7   A0A0T6BFU5   A0A1B0CQ58   Q16M69   A0A182G855   A0A0P4WSB1   T1G9X5   A0A2H4PSK2   A0A087UNV3   D5GS30   A0A1J1HSR1   A0A2R4FYF3   A0A2P6KXG3   A0A0K8T2D6   A0A336MZY9   T1IUX0   T1HL64   A0A2H4PSJ4   A0A0U4D960   A0A2R4FYF4   A0A2R2MMA9   A0A2L2YJ48   A0A1S3IB84   A0A1S3ICD4   A0A1S3IBH7   A0A1S3IB78   A0A210PI45   K1QHD9   A0A1B0DA39   A0A0Y0H5C1   A0A2L2YIU6   B7QGZ3   C3YYT0   B0WE21   A0A1I8P6X2   A0A1I8P6V3   A0A0K8T2Z9   K1Q9C3   A0A226EYM8   V4A474   A0A0K8T1Z0   A0A210PI46   A0A0A9YNI1   A0A146L2A8   D0R6J7   A0A165V7N5   A0A0P4X0Z3   A0A2R4FYE4   A0A2R7WDG5   A0A060XXV8   A0A3N0XLT2   A0A2R7WEN8   A0A2R4FYE2   A0A2C9JI86   A0A1L8EWD3   W5UAI2   Q0VA40   W5N0F7   A0A2R4FYE1   A0A3B4ACS6   W5MKQ7   A0A2D0QK83   A0A2D0QHX9   A0A2R4FYE0   A0A1L8EP94   A0A3Q2Y569   A0A3B3Z7A6   Q6P0J3   Q3L0W2   A0A3B3RMZ9   A0A3Q3ETM5   A0A1S3QTF2   A0A1S3MMW4   A0A2I4AMY9   A0A287A7L9   A0A3N0XID2   A0A2U9C954   G3NZ96   A0A3Q0SNC7   A0A146X554   A0A3Q3B985   A0A1A8PJA2   A0A1A8VB50   A0A1S3MNM1   A0A1S3MMS9  

Pubmed

19121390    26354079    22118469    26227816    23537049    28004739    + More
14724124    18362917    19820115    17510324    26483478    29116381    29581309    26823975    26561354    28812685    22992520    26702352    18563158    23254933    25401762    27076904    24755649    15562597    27762356    23127152    25463417    15358670    23594743    29240929   

EMBL

BABH01024464    ODYU01006396    SOQ48202.1    NWSH01000730    PCG74544.1    KQ459302    + More
KPJ01771.1    AGBW02012322    OWR45220.1    JTDY01001721    KOB73079.1    KQ461175    KPJ07840.1    APGK01029474    KB740735    KB632136    ENN79156.1    ERL89033.1    GEZM01042668    JAV79741.1    AY316682    KQ971372    AAQ83696.1    EFA10688.1    LJIG01000727    KRT86213.1    AJWK01023129    CH477875    EAT35428.1    JXUM01047510    KQ561522    KXJ78293.1    GDRN01035173    JAI67415.1    CAQQ02104023    MG182360    ATW72328.1    KK120790    KFM79042.1    FN562992    CBH30981.1    CVRI01000020    CRK91095.1    MG857620    AVT42542.1    MWRG01003936    PRD31003.1    GBRD01006290    GDHC01016613    JAG59531.1    JAQ02016.1    UFQT01002901    SSX34243.1    JH431566    ACPB03003777    MG182359    ATW72327.1    KR057959    ALX26997.1    MG857616    AVT42538.1    IAAA01023132    LAA08057.1    NEDP02076667    OWF36159.1    JH818128    EKC30539.1    AJVK01013175    AJVK01013176    KU193734    AMB26744.1    IAAA01023133    LAA08061.1    ABJB010847832    DS935469    EEC18115.1    GG666565    EEN54438.1    DS231903    EDS45151.1    GBRD01006291    JAG59530.1    EKC30538.1    LNIX01000001    OXA62184.1    KB202793    ESO88051.1    GBRD01006289    JAG59532.1    OWF36160.1    GBHO01010418    JAG33186.1    GDHC01017292    JAQ01337.1    FN396612    CAZ39568.1    KU249168    AMZ00045.1    GDRN01035174    JAI67414.1    MG857613    AVT42535.1    KK854660    PTY17702.1    FR906472    CDQ84528.1    RJVU01069537    ROI69378.1    PTY17701.1    MG857612    AVT42534.1    CM004482    OCT63615.1    JT409836    AHH38840.1    BC121268    AHAT01004575    MG857614    AVT42536.1    AHAT01020099    MG857611    AVT42533.1    CM004483    OCT61162.1    AY591904    AY457141    BC065597    BX005032    AY769696    AAU94633.1    AEMK02000070    RJVU01072388    ROI36351.1    CP026256    AWP13137.1    GCES01049747    JAR36576.1    HAEF01014832    HAEG01008289    SBR81480.1    HAEJ01016340    SBS56797.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000053240    + More
UP000019118    UP000030742    UP000192223    UP000007266    UP000092461    UP000008820    UP000069940    UP000249989    UP000015102    UP000054359    UP000183832    UP000015103    UP000085678    UP000242188    UP000005408    UP000092462    UP000001555    UP000001554    UP000002320    UP000095300    UP000198287    UP000030746    UP000193380    UP000076420    UP000186698    UP000221080    UP000008143    UP000018468    UP000261520    UP000264820    UP000000437    UP000261540    UP000261660    UP000087266    UP000192220    UP000008227    UP000246464    UP000007635    UP000261340    UP000264800   

PRIDE

H9JBP8    B7QGZ3    Q0VA40    Q6P0J3   

Pfam

PF00096   zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JBP8   A0A2H1W5V5   A0A2A4JSF7   A0A194QE80   A0A212EUN9   A0A0L7LCE1   + More
A0A194QS81   N6UEW4   A0A1W4WVI0   A0A1W4WU96   A0A1W4WJF4   A0A1Y1M2N8   Q6W2J7   A0A0T6BFU5   A0A1B0CQ58   Q16M69   A0A182G855   A0A0P4WSB1   T1G9X5   A0A2H4PSK2   A0A087UNV3   D5GS30   A0A1J1HSR1   A0A2R4FYF3   A0A2P6KXG3   A0A0K8T2D6   A0A336MZY9   T1IUX0   T1HL64   A0A2H4PSJ4   A0A0U4D960   A0A2R4FYF4   A0A2R2MMA9   A0A2L2YJ48   A0A1S3IB84   A0A1S3ICD4   A0A1S3IBH7   A0A1S3IB78   A0A210PI45   K1QHD9   A0A1B0DA39   A0A0Y0H5C1   A0A2L2YIU6   B7QGZ3   C3YYT0   B0WE21   A0A1I8P6X2   A0A1I8P6V3   A0A0K8T2Z9   K1Q9C3   A0A226EYM8   V4A474   A0A0K8T1Z0   A0A210PI46   A0A0A9YNI1   A0A146L2A8   D0R6J7   A0A165V7N5   A0A0P4X0Z3   A0A2R4FYE4   A0A2R7WDG5   A0A060XXV8   A0A3N0XLT2   A0A2R7WEN8   A0A2R4FYE2   A0A2C9JI86   A0A1L8EWD3   W5UAI2   Q0VA40   W5N0F7   A0A2R4FYE1   A0A3B4ACS6   W5MKQ7   A0A2D0QK83   A0A2D0QHX9   A0A2R4FYE0   A0A1L8EP94   A0A3Q2Y569   A0A3B3Z7A6   Q6P0J3   Q3L0W2   A0A3B3RMZ9   A0A3Q3ETM5   A0A1S3QTF2   A0A1S3MMW4   A0A2I4AMY9   A0A287A7L9   A0A3N0XID2   A0A2U9C954   G3NZ96   A0A3Q0SNC7   A0A146X554   A0A3Q3B985   A0A1A8PJA2   A0A1A8VB50   A0A1S3MNM1   A0A1S3MMS9  

PDB

2EBT     E-value=3.45258e-26,     Score=293

KEGG

101741704    K09199 transcription factor Sp9 | (RefSeq) transcription factor Sp9

GO

GO:0003676   GO:0000981   GO:0006357   GO:0005634   GO:0045743   GO:0035118   GO:0046872   GO:0003677   GO:0030326   GO:0003690   GO:0003887   GO:0008408   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

Subcellular location

Nucleus  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000730000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01438

outside

1  -  364

 

 

Pi

189.008473

Theta

185.153137

Tajima's D

0.111445

CLR

0.564727

CSRT

0.397230138493075

Interpretation

Uncertain