Gene

KWMTBOMO05485

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr10(-):3269772-3273290      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear   Reliability : 2.299

CDS

ATGGCGCAGGCCAACCGGCCGCGGCGGACAAATAAACCCATTCCCGTTCCTCGTGGTCGCACTTCCGCTGGTGTCACACCTACACCTCGCCCGACCGGCGGTCCTGCACCCGGAAAAAATAGTAATAGGAACAAAAAGAAAAAACAAAAGAAAAAAGATAAAAAAAAAGAAGCACGAGAGAGAGAGGAAGCCATCAGAGCGACTGATGCTGCACCTCTCGAACAATCCCAAATGGTCGTTAAGACAATGGAGGTCAACGAGGCCTCCCCTACTGCCCAAACATCGAACTCCAATCCGCCATTGCCATCGGCCCATCTGGCCGAAGACAATTCTAATCTGAACAGCCAGCCCCCCCTTCCCCCCCGCCCTCAGCGCGAGCGCCGCAGCGGTCGACAGGCCTCTCAGCCTGCCGGCTTTGCTGCATGGCTGCTGGCACTCTGGGAGAACTTGGCCGAGGAGTACAACCCTGAGGTTCTGCTGCTGGGGGAGACCTTGTTAAAACCTCAGGATGTGTTCAGGATTCCCAACTATTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTTGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCAGTCGGTGTGAGGGTACACCCCGCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTCCATCCTGAGGATATAAGACGGGCCCTGAATTACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGTTCCCGACTTAACACAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCTGATGAACCCACGCACGTCCCGACCGCCGCGCGATACCAGCCCGATGTGCTGGACGTGTGTGTTCATAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTGTCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACTTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTTCGGGGCTATGCGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCATTCCGAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGTTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATACATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCGCAGGGAAGCGTCCTGGCTCCACTCCTCTACGCTCTCTACACAAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAATAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTTTGAGGATGCAGAGGCTTTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCGTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCCATTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCACCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MAQANRPRRTNKPIPVPRGRTSAGVTPTPRPTGGPAPGKNSNRNKKKKQKKKDKKKEAREREEAIRATDAAPLEQSQMVVKTMEVNEASPTAQTSNSNPPLPSAHLAEDNSNLNSQPPLPPRPQRERRSGRQASQPAGFAAWLLALWENLAEEYNPEVLLLGETLLKPQDVFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHPAGGDMRIYAAYRPPGPEFHPEDIRRALNYDSRPALLVGDLNAKHVAWGSRLNTAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPVLVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFIPNDSAPSEAAFHQSVEESVANLLSSPVPPLGDDVFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVTAGVPQGSVLAPLLYALYTNDIPTLEGNLQAWEIDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARCARFLLRPLLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRARLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WZH0   X1WNI2   J9LFC9   J9LC21   + More
A0A1Y1NA23   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   A0A2J7PU96   X1WLB2   J9KPF1   A0A2J7Q6J2   A0A224X6Q4   A0A224XB44   A0A2J7PDM0   V5GNJ2   A0A023EYS8   A0A2J7R098   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7QES2   A0A2J7PSM7   J9JS95   A0A2J7PMN4   A0A2J7RQ52   A0A2J7RE85   A0A2J7PVX3   A0A2J7R7D0   A0A0A9YJ00   A0A139W8G9   A0A0A9YU04   A0A2J7QB68   A0A087UCW3   A0A2A4K918   A0A2M4CV52   A0A069DZL8   V5GNF3   A0A2H8TF37   A0A023F069   A0A0N1PFV1   A0A2M4CV42   A0A224X6T4   A0A2S2Q383   Q9BPQ0   A0A2S2NGV8   A0A1Y1LKN6   A0A1Y1KFR3   Q9XXW0   K7IN67   A0A2S2NPG3   A0A069DX78   A0A224XJI0   Q04135   Q6R811   A0A224XHW8   A0A023F0I3   A0A224XIB0   A0A139WA11   A0A224XF24   A0A2J7PP17   A0A0J7K7J8   Q961V7   O96546   A0A2A4IUM2   A0A224X6U5   A0A2S2R9D4   A0A087U3K8   A0A2S2PPK8   A0A2S2NH02   J9LYS0   P21328   A0A2J7QFL0   Q93137   A0A2M4BD67   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7RKP3   A0A2J7R6U1   A0A2M4BDV6   A0A224X6R6   A0A224X7Z3   A0A2S2N814   A0A2M4BD83   A0A224X6S1   A0A2J7PQB5   A0A142LX53   A0A087T3W0   A0A224X6W2  

EC Number

2.7.7.49

Pubmed

28004739    25474469    25401762    18362917    19820115    26334808    + More
26354079    10333566    20075255    1705654    14745026    10380107    2463954    3040362    1714378    25527032   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02034467    ABLF02008153    + More
ABLF02008462    ABLF02008464    ABLF02023911    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GEZM01008457    JAV94772.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    ABLF02042518    ABLF02057746    ABLF02041767    NEVH01017470    PNF24199.1    GFTR01008279    JAW08147.1    GFTR01008262    JAW08164.1    NEVH01026386    PNF14434.1    GALX01005299    JAB63167.1    GBBI01004395    JAC14317.1    NEVH01008277    PNF34262.1    NEVH01007402    PNF35856.1    NEVH01016340    PNF25410.1    NEVH01015305    PNF27092.1    NEVH01021925    PNF19341.1    ABLF02028535    ABLF02028545    NEVH01023979    PNF17579.1    NEVH01001347    PNF42959.1    NEVH01005277    PNF39135.1    NEVH01020940    PNF20481.1    NEVH01006736    PNF36716.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    KQ973342    KXZ75569.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01016302    PNF25823.1    KK119261    KFM75202.1    NWSH01000032    PCG80496.1    GGFL01004957    MBW69135.1    GBGD01000415    JAC88474.1    GALX01005359    JAB63107.1    GFXV01000908    MBW12713.1    GBBI01003810    JAC14902.1    KQ459265    KPJ02064.1    GGFL01005012    MBW69190.1    GFTR01008261    JAW08165.1    GGMS01002992    MBY72195.1    AB055391    BAB21761.1    GGMR01003407    MBY16026.1    GEZM01053022    JAV74219.1    GEZM01084969    JAV60363.1    AB018558    BAA76304.1    GGMR01006408    MBY19027.1    GBGD01000389    JAC88500.1    GFTR01008257    JAW08169.1    X17551    CAA35587.1    AY508487    AAS13459.1    GFTR01008254    JAW08172.1    GBBI01003747    JAC14965.1    GFTR01008246    JAW08180.1    KQ971729    KYB24751.1    GFTR01008038    JAW08388.1    NEVH01023280    PNF18085.1    LBMM01012041    KMQ86458.1    AY047531    AAK77263.1    AF081103    AAC72921.1    NWSH01007753    PCG62823.1    GFTR01008251    JAW08175.1    GGMS01017365    MBY86568.1    KK118005    KFM71947.1    GGMR01018716    MBY31335.1    GGMR01003864    MBY16483.1    ABLF02041861    M22874    M38643    NEVH01014858    PNF27387.1    U07847    AAA17752.1    GGFJ01001858    MBW50999.1    NEVH01007838    PNF34986.1    NEVH01019964    PNF22161.1    NEVH01002716    PNF41415.1    NEVH01006754    PNF36554.1    GGFJ01001857    MBW50998.1    GFTR01008269    JAW08157.1    GFTR01007929    JAW08497.1    GGMR01000676    MBY13295.1    GGFJ01001822    MBW50963.1    GFTR01008271    JAW08155.1    NEVH01022639    PNF18527.1    KU543687    AMS38379.1    KK113281    KFM59799.1    GFTR01008260    JAW08166.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000007266    UP000054359    + More
UP000053268    UP000002358    UP000036403   

PRIDE

Q9BPQ0    Q9XXW0    Q04135    Q961V7    P21328    Q93137    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WZH0   X1WNI2   J9LFC9   J9LC21   + More
A0A1Y1NA23   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   A0A2J7PU96   X1WLB2   J9KPF1   A0A2J7Q6J2   A0A224X6Q4   A0A224XB44   A0A2J7PDM0   V5GNJ2   A0A023EYS8   A0A2J7R098   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7QES2   A0A2J7PSM7   J9JS95   A0A2J7PMN4   A0A2J7RQ52   A0A2J7RE85   A0A2J7PVX3   A0A2J7R7D0   A0A0A9YJ00   A0A139W8G9   A0A0A9YU04   A0A2J7QB68   A0A087UCW3   A0A2A4K918   A0A2M4CV52   A0A069DZL8   V5GNF3   A0A2H8TF37   A0A023F069   A0A0N1PFV1   A0A2M4CV42   A0A224X6T4   A0A2S2Q383   Q9BPQ0   A0A2S2NGV8   A0A1Y1LKN6   A0A1Y1KFR3   Q9XXW0   K7IN67   A0A2S2NPG3   A0A069DX78   A0A224XJI0   Q04135   Q6R811   A0A224XHW8   A0A023F0I3   A0A224XIB0   A0A139WA11   A0A224XF24   A0A2J7PP17   A0A0J7K7J8   Q961V7   O96546   A0A2A4IUM2   A0A224X6U5   A0A2S2R9D4   A0A087U3K8   A0A2S2PPK8   A0A2S2NH02   J9LYS0   P21328   A0A2J7QFL0   Q93137   A0A2M4BD67   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7RKP3   A0A2J7R6U1   A0A2M4BDV6   A0A224X6R6   A0A224X7Z3   A0A2S2N814   A0A2M4BD83   A0A224X6S1   A0A2J7PQB5   A0A142LX53   A0A087T3W0   A0A224X6W2  

PDB

6AR3     E-value=3.57593e-05,     Score=117

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

1032

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0252499999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00113

outside

1  -  1032

 

 

Pi

344.896669

Theta

230.290313

Tajima's D

2.039093

CLR

398.936348

CSRT

0.893405329733513

Interpretation

Uncertain