SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04070
Annotation
gag-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.035
 

Sequence

CDS
ATGGACGCTGTATTCGCGGAATTCCTCCGACTTCACCACCCACAGCTCGCCTCAGAGTTTCTGGCCTTCAAGGCCAATCACACTGCGAGCCCTCTCGAGGACTCCGCCGCGCTCGCTGCTCCTGCGTCGCCTGTACCTGCGTGCAAAGCTTCTGCATTGAGCAACGCAGCCTCCGTCGTGCCTGCCGCTCCCGTGTCGCCTATATTGGCGAGTAAAGCTGCTGCGTCGTCCGCTGTGACCATCGTTTCAGCTGAGCAATCATCCGCGGCCTCCGTCGCGCCCTCTAAAATACCTACACTTGCTCGTAGGTCGCCTGCACCCGCCTCCTCGTGCTCCGACTCTGATTCGGACATGGAGGTTGACCTCGCCCCCACCTCATCGACGGATGGATTCACCTTGGTACAGAAGGGTAAGAAGCGTGCCGCGGAGTCCCGAGCTCCCGCGGCCGCTAAAATTAGCAAAGCCGCGAACGCGTCGCACCCCCGCCCTCAGACTCCCGTTGCGCCCCCAGCCCGTGCCACTCCGTCGCCGCGTCCGGTGGCACTAAATAAAACCCAGACCCCTCCCCCGGTTATCCTTCAGGAGAAGGCAGCTTGGGATCGAGTTTGCCTGGCCCTTAAGGCCAAAAATATAAATTTCACGAATGCCCGTAACCTCGCGAACGGCATTCAAATTAAGGTTCAAACACCCGACGACCATAGGGCCCTCTCTTCTTACCTCCGTAAGGAACGTATAAGTTTCCATACGTATACGCTCCAGGAGGAGCGCGAACTCCGCGTTGTAATACGTGGAATCCCTAAAGAGTTAGATGTAGAGCTCGTCAAGGCCGATCTGTTAGAACAGGGCTTTCCAGTGAATTCTGTGCACCGTATGCACACCGGTCGCGGTAGGGAGCCATATAATATGGTTCTAGTCACCCTCCAGCCTACCCCCGAGGGTAAGAAAATCTTCAACACACAGGCCGTCTGTAGGCTCTCCGGTATCGCCGTCGAAGCCCCCCATAAAAAAGGCACTCCTAGCCAGTGCCATAACTGTCAACTGTACGGGCACTCTTCCCGTAACTGTCACGCGCGCCCCCGATGTGTTAAGTGTTTGGGCGATCACGCCACGGCCCTCTGCGCTCGCGACCAAAAAACCGCGACGGAACCGCCTAGCTGCGTCCTGTGTCAAACACAGGGTCACCCCGCAAATTACCGCGGATGCCCCCGAGCCCCGAAAATAAATCGCCGCGTCGCCCGCCAAAACCGCCTCCGAGCTTCCGGCCCAGACATCAAAGCCTCGGCACCCTCTGTGTCGCAGGCTAAGCCAGCGTTCGTTCCGGCGAAGGTGCCCAGTGTCTCGGCCTGGGCGAAACCGCTGTCGTATATGAACACGGCTACAATTCCCTCCTCCGCGATTCGTCCCGCCCCCGCGACTCGTCCCGCCCCCGCGACTCGTCCCTCTCCCGCGACTTGCCCTCCGACCGCGTCCGACAATCTCGCTTTAGCGATCGACTTCTTTCAGTCGATCAACTTTGAGCGCGTTAACGCTTTGGGCGACGCCATTCGCGCTGCCTCCACTGCACAACACTTTATCGCCGTTGTGCAAGAATACGCCGACGTATAA
Protein
MDAVFAEFLRLHHPQLASEFLAFKANHTASPLEDSAALAAPASPVPACKASALSNAASVVPAAPVSPILASKAAASSAVTIVSAEQSSAASVAPSKIPTLARRSPAPASSCSDSDSDMEVDLAPTSSTDGFTLVQKGKKRAAESRAPAAAKISKAANASHPRPQTPVAPPARATPSPRPVALNKTQTPPPVILQEKAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGFPVNSVHRMHTGRGREPYNMVLVTLQPTPEGKKIFNTQAVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCQTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQAKPAFVPAKVPSVSAWAKPLSYMNTATIPSSAIRPAPATRPAPATRPSPATCPPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADV

Summary

Pfam
PF07530   PRE_C2HC
Interpro
IPR006579   Pre_C2HC_dom       
ProteinModelPortal

Ontologies

GO

Topology

Length:
534
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00108
Exp number, first 60 AAs:
0.00026
Total prob of N-in:
0.00053
outside
1  -  534
 
 

Population Genetic Test Statistics

Pi
30.656666
Theta
36.654157
Tajima's D
3.199714
CLR
0
CSRT
0.986650667466627
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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