Gene

KWMTBOMO04041

Pre Gene Modal

BGIBMGA010283

Annotation

PREDICTED:_septin_and_tuftelin_interacting_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(+):9632511-9637675      View in EpiBrowser

Full name

Septin-interacting protein 1      

Transcription factor

TIP_N

Location in the cell

Nuclear   Reliability : 3.867

CDS

ATGTCAGACGATGAGGTTATAAAGTTTGAGATCACAGACTACGATTTGGATAATGAATTCAACCCCGGCCGTGGAAGAAAAGCTAACAAGGAACAACAAATATACGGTGTATGGGCCAAAGACAGTGATGATGATGAAAATGAAGATAATGTTAGACAGAGAATACGTAAACCTAAAGATTTTTCTGCACCAATTGGTTTCGTGGCGGGTGGAGTTCAACAGGCTGGCAAAAAAAAAGACAAGACTAAAGAAATAAAACCAGCTGAAGCGTCTACTTCTGCTCCTAAGTACTCAGACAGTTCTGATGAGGAACCAGAGGTTCCAGTAGCGAGTGACACGGCGGGAATCAGGAGACAGGGACAGGGAATGCGTCCACCATCATTAGGTGGAAATGTGGGAAATTGGGAAAAACATACTAAAGGAATCGGAGCAAAATTGTTGTTGCAGATGGGATACCAACCGGGTAAAGGTTTGGGTAAAGATTTGCAAGGTATCTCAGCGCCGGTCGAGGCTACGCTGCGCAAAGGCAGAGGTGCGATCGGAGCTTACGGACCAGAAAAGGCAACGATAAAAGCCAAAAAAGAAGAGGAACGTCGCATCAAAGATAAAGAAGATCAGGATAAAGATAAAACCGAAAAGAATTACAACTGGAAGAAATCGCACAAGGGTCGTTATTTTTACAGAGATGCCGCTGACGTCATTCAGGAGGGTAAACCGACAACGTATACCATAGCAAGTAACGAGTTGTCCCGCGTGCCCGTGATCGACATGACCGGCAAGGAGAAGCGCGTGCTGAGCGGCTACCACGCGCTGCGGGCGCAGGCGCCGCGCTACGAGCACGAGCCCAGGAGGAAGTGCCAGAACTTCTCCGCGCCGCAGCTGGTCCACAACCTCGAGGTCATGGTCGAGTGCTGCGAACAGGTCCAAGCCCTCAGGTTTATACATCTTTATCGCTTAGACAAGTGGTGGAATTCACAGCCGACCTGGTGTTAA

Protein

MSDDEVIKFEITDYDLDNEFNPGRGRKANKEQQIYGVWAKDSDDDENEDNVRQRIRKPKDFSAPIGFVAGGVQQAGKKKDKTKEIKPAEASTSAPKYSDSSDEEPEVPVASDTAGIRRQGQGMRPPSLGGNVGNWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATLRKGRGAIGAYGPEKATIKAKKEEERRIKDKEDQDKDKTEKNYNWKKSHKGRYFYRDAADVIQEGKPTTYTIASNELSRVPVIDMTGKEKRVLSGYHALRAQAPRYEHEPRRKCQNFSAPQLVHNLEVMVECCEQVQALRFIHLYRLDKWWNSQPTWC

Description

May be involved in pre-mRNA splicing.

Similarity

Belongs to the TFP11/STIP family.

Uniprot

A1XDB3   H9JL82   A0A212FCY7   A0A194RKK6   A0A194Q5P5   A0A2A4K201   + More
A0A2H1WJM9   A0A2W1BUW5   A0A1E1VZP1   S4PDH3   A0A139WJU9   A0A1W4WLB1   A1XDA7   A0A1Y1LE60   A0A1Y1LAH6   N6TNF2   A0A1Y1LGA8   A0A1B0GIT1   A0A182R3Y2   A0A182NAK3   A0A1Y1LAH9   A0A182Q9K9   Q16YS0   A0A1B0D5Y9   A0A1Y1LAH8   A0A182KWD4   A0A182TUL0   A0A182F3B0   A1XDB4   A0A182VTE4   A0A1S4G738   A0A182GJF2   C6ETQ3   A0A182LTI5   Q16YS1   A0A3Q0IP11   A0A182IBE0   W5JQZ1   A0A182X6B7   A1XDB5   A0A182VK21   A0A182PIZ5   A0A084VME3   C6ETS6   A0A146KZW4   A0A182YR69   B0W0H4   A0A182SHH9   A0A182J5M6   T1IB51   A0A0A9X2E3   C6ETS8   U4U4Z9   C6ETQ5   C6ETS9   A0A034WBN6   A0A1B6MLQ3   C6ETQ4   W8BBQ4   C6ETS5   C6ETR8   A0A1Q3F2N3   A0A182JXN2   A0A0K8VF45   A0A0C9QGZ0   A0A1Y1LAG5   A0A1A9USN8   A0A0M9AA34   A0A023F277   A0A151J015   A0A1B6IUK7   A0A0K8SVR8   A0A0J7KL79   C6ETR1   A0A154PBQ0   E2BJK8   B4KGZ0   C6ETS1   A0A1Y1LE80   F4WE40   A0A0L7RJW0   A0A158NUU0   A0A1B0A3T9   A0A195BBD2   C6ETS0   A0A151X453   A0A0L0BWZ6   A0A151K073   A0A1B0G097   A0A2S2Q3N6   E0VXQ2   A0A2S2PIW7   A0A310SNI8   A1XDA8   A0A2A3EJI9   A0A1A9X057   A0A1J1I0P0   A0A1B6GH69   J9JQN9  

Pubmed

17289020    19121390    22118469    26354079    28756777    23622113    + More
18362917    19820115    28004739    23537049    17510324    20966253    26483478    20920257    23761445    12364791    24438588    26823975    25244985    25401762    25348373    24495485    25474469    20798317    17994087    21719571    21347285    26108605    20566863   

EMBL

DQ342046    ABC69938.1    BABH01011772    BABH01011773    AGBW02009118    OWR51615.1    + More
KQ460075    KPJ17954.1    KQ459582    KPI98720.1    NWSH01000282    PCG77793.1    ODYU01009050    SOQ53176.1    KZ149930    PZC77424.1    GDQN01010856    JAT80198.1    GAIX01003676    JAA88884.1    KQ971338    KYB28202.1    DQ342040    ABC69932.1    KYB28201.1    GEZM01061225    GEZM01061218    GEZM01061217    JAV70630.1    GEZM01061224    GEZM01061222    GEZM01061219    GEZM01061214    JAV70634.1    APGK01057945    APGK01057946    KB741283    ENN70775.1    GEZM01061221    JAV70636.1    AJWK01015376    GEZM01061216    JAV70649.1    AXCN02002191    CH477510    EAT39779.1    AJVK01003470    GEZM01061223    JAV70633.1    DQ342047    ABC69939.1    JXUM01012806    KQ560362    KXJ82820.1    EU707401    ACJ45811.1    AXCM01004755    EAT39778.1    APCN01000672    ADMH02000364    ETN66817.1    AAAB01008944    DQ342048    HACL01000127    ABC69940.1    CFW94421.1    ATLV01014586    KE524975    KFB39137.1    EU707425    ACJ45836.1    GDHC01018087    JAQ00542.1    DS231817    EDS39713.1    ACPB03007249    GBHO01029490    JAG14114.1    EU707427    ACJ45837.1    KB631738    ERL85681.1    EU707403    ACJ45813.1    EU707428    ACJ45832.1    GAKP01005951    JAC53001.1    GEBQ01003089    JAT36888.1    EU707402    ACJ45812.1    GAMC01007895    JAB98660.1    EU707424    ACJ45835.1    EU707417    ACJ45834.1    GFDL01013258    JAV21787.1    GDHF01014831    JAI37483.1    GBYB01002744    JAG72511.1    GEZM01061220    JAV70639.1    KQ435704    KOX80307.1    GBBI01003521    JAC15191.1    KQ980670    KYN14624.1    GECU01017098    JAS90608.1    GBRD01008428    JAG57393.1    LBMM01006021    KMQ91009.1    EU707409    ACJ45819.1    KQ434869    KZC09329.1    GL448571    EFN84165.1    CH933807    EDW12201.1    EU707420    ACJ45827.1    GEZM01061215    JAV70650.1    GL888102    EGI67478.1    KQ414579    KOC71124.1    ADTU01026715    KQ976532    KYM81525.1    EU707419    ACJ45826.1    KQ982557    KYQ55054.1    JRES01001211    KNC24562.1    KQ981296    KYN43118.1    CCAG010018487    GGMS01003028    MBY72231.1    DS235833    EEB18158.1    GGMR01016783    MBY29402.1    KQ759784    OAD62855.1    DQ342041    ABC69933.1    KZ288238    PBC31346.1    CVRI01000038    CRK93763.1    GECZ01008655    GECZ01008002    JAS61114.1    JAS61767.1    ABLF02036507   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000218220    UP000007266    + More
UP000192223    UP000019118    UP000092461    UP000075900    UP000075884    UP000075886    UP000008820    UP000092462    UP000075882    UP000075902    UP000069272    UP000075920    UP000069940    UP000249989    UP000075883    UP000079169    UP000075840    UP000000673    UP000076407    UP000075903    UP000075885    UP000030765    UP000076408    UP000002320    UP000075901    UP000075880    UP000015103    UP000030742    UP000075881    UP000078200    UP000053105    UP000078492    UP000036403    UP000076502    UP000008237    UP000009192    UP000007755    UP000053825    UP000005205    UP000092445    UP000078540    UP000075809    UP000037069    UP000078541    UP000092444    UP000009046    UP000005203    UP000242457    UP000091820    UP000183832    UP000007819   

PRIDE

A1XDB3    H9JL82   

Pfam

PF01585   G-patch        + More
PF07842   GCFC
PF12457   TIP_N

Interpro

IPR024933   STIP        + More
IPR000467   G_patch_dom       
IPR022159   STIP/TFIP11_N       
IPR022783   GCFC_dom       

ProteinModelPortal

A1XDB3   H9JL82   A0A212FCY7   A0A194RKK6   A0A194Q5P5   A0A2A4K201   + More
A0A2H1WJM9   A0A2W1BUW5   A0A1E1VZP1   S4PDH3   A0A139WJU9   A0A1W4WLB1   A1XDA7   A0A1Y1LE60   A0A1Y1LAH6   N6TNF2   A0A1Y1LGA8   A0A1B0GIT1   A0A182R3Y2   A0A182NAK3   A0A1Y1LAH9   A0A182Q9K9   Q16YS0   A0A1B0D5Y9   A0A1Y1LAH8   A0A182KWD4   A0A182TUL0   A0A182F3B0   A1XDB4   A0A182VTE4   A0A1S4G738   A0A182GJF2   C6ETQ3   A0A182LTI5   Q16YS1   A0A3Q0IP11   A0A182IBE0   W5JQZ1   A0A182X6B7   A1XDB5   A0A182VK21   A0A182PIZ5   A0A084VME3   C6ETS6   A0A146KZW4   A0A182YR69   B0W0H4   A0A182SHH9   A0A182J5M6   T1IB51   A0A0A9X2E3   C6ETS8   U4U4Z9   C6ETQ5   C6ETS9   A0A034WBN6   A0A1B6MLQ3   C6ETQ4   W8BBQ4   C6ETS5   C6ETR8   A0A1Q3F2N3   A0A182JXN2   A0A0K8VF45   A0A0C9QGZ0   A0A1Y1LAG5   A0A1A9USN8   A0A0M9AA34   A0A023F277   A0A151J015   A0A1B6IUK7   A0A0K8SVR8   A0A0J7KL79   C6ETR1   A0A154PBQ0   E2BJK8   B4KGZ0   C6ETS1   A0A1Y1LE80   F4WE40   A0A0L7RJW0   A0A158NUU0   A0A1B0A3T9   A0A195BBD2   C6ETS0   A0A151X453   A0A0L0BWZ6   A0A151K073   A0A1B0G097   A0A2S2Q3N6   E0VXQ2   A0A2S2PIW7   A0A310SNI8   A1XDA8   A0A2A3EJI9   A0A1A9X057   A0A1J1I0P0   A0A1B6GH69   J9JQN9  

PDB

5Y88     E-value=1.4606e-05,     Score=115

KEGG

100037443    K13103 tuftelin-interacting protein 11 | (RefSeq) STIP; septin and tuftelin interacting protein

GO

GO:0005681   GO:0008380   GO:0006397   GO:0003676   GO:0071008   GO:0000390   GO:0016021   GO:0006030   GO:0008061   GO:0005524   GO:0007179   GO:0006811   GO:0006032   GO:0004672   GO:0048384  

Subcellular location

Nucleus  

Length:

330

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00176

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.01305

outside

1  -  330

 

 

Pi

303.209027

Theta

165.512419

Tajima's D

3.257752

CLR

0.116296

CSRT

0.988650567471626

Interpretation

Uncertain