Gene

KWMTBOMO03663  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002207

Annotation

PREDICTED:_zinc_finger_protein_235-like_[Bombyx_mori]

Location

Bomo_Chr6(+):15184280-15189844      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.779

CDS

ATGGAGGAATCTAAAAAGCTTTGCCGAGCGTGCCTTGGTGTAGAAAACCTAAAGAAAATTGAAAACTCGCAACTTGAAGAAACGTTCAGATTATTAAGTGGTGACCAAGTGTTCTCATCTAGGAAACCATATATCTTCTGCCATCTATGTCATGCACAGTTGTTAATATGTCATCGATTCAGAGAAAGATGCCAACACTCAAATGAGGTTCTGGAACAAACTTTGAACAATGAAGTGCTTGATAGTGATGATATCTCAACACCCTCACATGTTAAAGCCACAGCAGAAAACGTTGAATATAATGAAAGCAAAAATCCTATTTTAACTGAAGTCTACATTGAATCTGAAAATAAAGAAAGAGATGATACAAACATTAAAGATGAAAATATTAAAGAACTAGTCAATGTTAATATAAAAAATGAATTAAATGACCATGATTGCAAAAATTTTTGTGAATCTAATGAGGGACTAGATGATTTGGATACAGAAACACACAAGAAAAACACCTTAACGAAAGAATTGGTGGAAAATGAAGAAAAAACATTGGTAACCGAATTAAATAATGAAACAAAAAAACGGACACGTAAAAAAAAATTTAAGCAGATAGGTAAATATTTTGAAACAAAACAGAACATGGCCAATTTTGAACATACATATGATTTGAATATAATAACTTTGAGTACCGAAGATCAATACAAAGAGATTTTGAAACGTAAAAATGGCTTTTCGTATCCATTCAGATGCAGCCTATGCTACAAAAGTTATATGGACGATGATAACTTGAATAAACATTTTAAAAAGTTGCATGATCCTAGTAGAGGCGATGAGGTGTGTGATATATGCAAGACACGTTACAGAGACAAGAAAATGTTGAAAAGACACATGAAGACTCATCGCTTGAAGTTTGCCTGTAGACAGTGTAAACATGTCTCTATACTTAGCTCACAAGCAGTAGAACATTACAACATGCACAGAGGCCAGGTGTACAAGTGTCAAAACTGTGATAAGACTTACGACAAACAAACGACGTACTTAGCGCACATAAGGTACAGTCACCCGTCGAAGTGCATCTGGTGCGAGCTGTGCGGCGAGTCCTACGTCTCCGAGACCGGCCTCAAGTGTCACCAGAACTTGGTCCATAAGGAGTTGAAATACCCACCGAACGCTAAATGCGCAAATTGTGAAACACGATTCCTGAATAACGAAGCCTATCGGACGCACAGCTTGTCGTGCAACAAGTCGGCGAGCATGCCGGGCGCTGCGTGCGCTCACTGCGGCCGCAGCTTCGACAGCAGGCCGTCGTTGCGCGAACATTTGTTAGAAACTCACGGGAACAAAAAGAATGATAAACTGTACCCCTGTACCAAGGGCGACGCTTATGCGTGA

Protein

MEESKKLCRACLGVENLKKIENSQLEETFRLLSGDQVFSSRKPYIFCHLCHAQLLICHRFRERCQHSNEVLEQTLNNEVLDSDDISTPSHVKATAENVEYNESKNPILTEVYIESENKERDDTNIKDENIKELVNVNIKNELNDHDCKNFCESNEGLDDLDTETHKKNTLTKELVENEEKTLVTELNNETKKRTRKKKFKQIGKYFETKQNMANFEHTYDLNIITLSTEDQYKEILKRKNGFSYPFRCSLCYKSYMDDDNLNKHFKKLHDPSRGDEVCDICKTRYRDKKMLKRHMKTHRLKFACRQCKHVSILSSQAVEHYNMHRGQVYKCQNCDKTYDKQTTYLAHIRYSHPSKCIWCELCGESYVSETGLKCHQNLVHKELKYPPNAKCANCETRFLNNEAYRTHSLSCNKSASMPGAACAHCGRSFDSRPSLREHLLETHGNKKNDKLYPCTKGDAYA

Uniprot

A0A194QHT0   A0A2A4JVY9   A0A1E1W0D9   A0A2H1W417   A0A2W1BBI5   A0A2W1BNQ1   + More
A0A2W1BE97   A0A1E1W0D1   A0A2A4JSJ1   A0A212ET42   A0A2H1VK03   A0A2A4K8P9   A0A212F5H6   A0A2H1V264   A0A212F6M7   A0A2H1WS93   A0A3S2NNE3   H9IWV3   A0A2W1BWP0   A0A2A4K5S6   A0A0N1IQ78   A0A2H1WDF0   A0A212ESE3   A0A2W1BQ38   A0A1E1VZG4  

Pubmed

26354079    28756777    22118469    19121390   

EMBL

KQ458981    KPJ04495.1    NWSH01000508    PCG75979.1    GDQN01010599    JAT80455.1    + More
ODYU01006169    SOQ47788.1    KZ150166    PZC72652.1    KZ150005    PZC75235.1    KZ150164    PZC72671.1    GDQN01010670    JAT80384.1    NWSH01000652    PCG75007.1    AGBW02012649    OWR44658.1    ODYU01002960    SOQ41121.1    NWSH01000027    PCG80587.1    AGBW02010195    OWR48987.1    ODYU01000342    SOQ34930.1    AGBW02009994    OWR49387.1    ODYU01010673    SOQ55945.1    RSAL01000025    RVE52097.1    BABH01020992    BABH01020993    KZ149937    PZC77096.1    NWSH01000141    PCG79123.1    KQ459718    KPJ20255.1    ODYU01007811    SOQ50892.1    AGBW02012803    OWR44415.1    PZC77098.1    GDQN01010985    JAT80069.1   

Proteomes

UP000053268    UP000218220    UP000007151    UP000283053    UP000005204    UP000053240    + More

PRIDE

H9IWV3   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       

SUPFAM

SSF57667   SSF57667       

Gene 3D

3.30.40.180    

ProteinModelPortal

A0A194QHT0   A0A2A4JVY9   A0A1E1W0D9   A0A2H1W417   A0A2W1BBI5   A0A2W1BNQ1   + More
A0A2W1BE97   A0A1E1W0D1   A0A2A4JSJ1   A0A212ET42   A0A2H1VK03   A0A2A4K8P9   A0A212F5H6   A0A2H1V264   A0A212F6M7   A0A2H1WS93   A0A3S2NNE3   H9IWV3   A0A2W1BWP0   A0A2A4K5S6   A0A0N1IQ78   A0A2H1WDF0   A0A212ESE3   A0A2W1BQ38   A0A1E1VZG4  

PDB

2I13     E-value=1.12899e-07,     Score=135

KEGG

101738042    no KO assigned | (RefSeq) zinc finger protein 235-like

GO

GO:0005634   GO:0003676   GO:0008270   GO:0003677   GO:0016021   GO:0003700   GO:0046872   GO:0005515   GO:0051103   GO:0005524   GO:0042555   GO:0048384  

Length:

461

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00078

Exp number, first 60 AAs:

0.00077

Total prob of N-in:

0.01003

outside

1  -  461

 

 

Pi

4.236453

Theta

14.426344

Tajima's D

-1.459017

CLR

1.510152

CSRT

0.0634468276586171

Interpretation

Uncertain