Silkworm Genome Informatics Database

Gene

KWMTBOMO03524

Pre Gene Modal

BGIBMGA013750

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):10507328-10513484 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.422

CDS

ATGGACGCTGTATTTGCGGAATTTCTCCGGCTTCGCTACCCAAAGCTCACTTCCGAGTTTCAGGCCTTCAAGGCCGATCACACCGCGAGCCCTCTCGTGGACTCCACCGAACTCGCTGCTCCTGCGTCGCCTGTACCTGCGTGCAAAGCTTCTGCATCGAGCACCGCAGCCTCCGTCGTGCCTGCCGTTCCCGCGTCGCCTATACTGGCAAGTAAAACTGCTGCGTCGTCCGCCGTGGTCACCGTTCCAGCAGCGCGATCATCCGCGGCCTCCGTCGCGCCCTCCAAAACTCCCGCTCGTAGGTCACCTGCGCCCGCCTCCTCGTCCTCCGACTCTGACTCGGAGATGGAGGTCGACCTCGCCCCCGCCTCATCGACGGATGAATTCACCCTGGTACAAAAGGGTAAGAAGCGTGCCGCGGAGTCTCGAGCTCCCGCGGCCGCTAAAATTAGCAAAGCCGCGAACGCGTCGCGTCCCCGCCCTCAGACTCCCGTTGCGCCTCCAGCCCGTGCCACTCCGTCGCCGCGTCCGGTGGCACAAAAAAAAACCCAGACCCCTCCCCCGGTAATCCTTCAAGAGAAGGCAGCTTGGGATCGAGTTTCCCTGGCCCTTAAGGCCAACAATATCAATTTCACGAATGCCCGTAACCTCGCGAACGGCATTCAAATTAAGGTTCGAACACCCGACGACCATAGGGCCCTCTCTTCTTACCTCCGTAAGGAGCGTATAAGTTTCCACACGTATACGCTCCAGGAGGAGCGCGAACTCAATGCCGTCATACGTGGCATCCCTAAAGAGTTGGATGCCGAGCTCGTCAAGGCCGACCTTCTCGAACAAGGCCTACCGGTTAACTCCGTACACCGCATGCACACAGGCCGCGGAAGGGAGCCATATAACTGATTTTTAAACGCTTACGGTCTCGCAAATCAACGTGATCAGGTTTCTGACTTTTTGCGTGACCATCAAATTGATATCTTTTTAGTGCAGGAGACCCTACTTAAGCCCGCGCGCCGTGACCCTAAAATCGCGAACTATAACATGGTCAGGAACAACAGGCTCTCTGCTCGTGGTGGTACCGTAATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGTGACCTAAATTGTAAACATATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCATTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCAGGGCATCAGCCTGGCTGAATCTGATCCACCATCACTCCCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCTCCGCTTCAAATTGTCCGACGATATAGGGAACTCCTTAGAGCTAAAAACGCCTCGATACGCGCCTACGACAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCAACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAAGTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGACGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACAAGTTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGTGTCTGCTCTACAAACGCCTCAGAGACTTCATCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAACCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAATAAGTCCTTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCTCACGGATTTCCTCCCGTATTAGGAGAAGGAATCTCACACCCCCGATTACTCTCTTTACACAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCTCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTTCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATCCAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCACGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACTTCGGCTTGAAGTGCAAGCGAGAGCGCGCAACGAGCGACAAAGAGGCACAATCGGCCTCCGCGTTCGGCAGCTTTCGACATCTGTCTCTCTCCTACTTGAGTGAGCGATGCATCCGCGTGGACAGCTGCTATACAACAATACATTTACATGTTTTCGTCAAGTATGAAGTTCAGTGA

Protein

MDAVFAEFLRLRYPKLTSEFQAFKADHTASPLVDSTELAAPASPVPACKASASSTAASVVPAVPASPILASKTAASSAVVTVPAARSSAASVAPSKTPARRSPAPASSSSDSDSEMEVDLAPASSTDEFTLVQKGKKRAAESRAPAAAKISKAANASRPRPQTPVAPPARATPSPRPVAQKKTQTPPPVILQEKAAWDRVSLALKANNINFTNARNLANGIQIKVRTPDDHRALSSYLRKERISFHTYTLQEERELNAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNXFLNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNNRLSARGGTVIYYRRALHCVPLDPPALEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTQGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLLRFKLSDDIGNSLELKTPRYAPTTGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSNGISNRVIKLLPVQVIVMLASIFNAAMTNCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYECLLYKRLRDFISSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSSRISSRIRRRNLTPPITLFTQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYLMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGASWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRSRLRDFGLKCKRERATSDKEAQSASAFGSFRHLSLSYLSERCIRVDSCYTTIHLHVFVKYEVQ

Uniprot

Q93137 A0A2S2QEE0 A0A2S2NGV8 A0A0V0G5B6

EMBL

U07847 AAA17752.1 GGMS01006359 MBY75562.1 GGMR01003407 MBY16026.1 + More
GECL01003538 JAP02586.1

PRIDE

Q93137

Pfam

PF00078 RVT_1 + More
PF14529 Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q93137 A0A2S2QEE0 A0A2S2NGV8 A0A0V0G5B6

KEGG

105841788 no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003964

Length:

1217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.00327

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00009

outside

1 - 1217

Pi

119.729868

Theta

30.591279

Tajima's D

2.541866

CLR

0.424535

CSRT

0.951702414879256

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree