Silkworm Genome Informatics Database

Gene

KWMTBOMO03361

Pre Gene Modal

BGIBMGA006397

Annotation

_Hox_cluster_protein_Shx10_[Bombyx_mori]

Location

Bomo_Chr6(-):5276115-5279257 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 3.769

CDS

ATGCTGTTAACTGCTTTGACCCCGCACAGTAATACATATGAGAATAATCCATGGAAGAATCAGCATTTCGCCACACCATGGCCTGCGATTCCGGAAAACATTACAAAAAATGAATCGAGTAAGCCTAGAAAGTACAAATCTAAGCGTGTGCGTACATCTTTTACTTGGGATCAACAGTTAATGCTAGAACAGACGTTTGAGAAAACCCAATATATAAATGGAACTGACCGCCGAGAACTAGCTCAAAAATTGGGCATCGGCGAAAAATGCATCAAAATATGGTTCCAAAACCGAAGAATGAAGAACAAAAGAAAATCTTCAGAGTCTAGTGATTCGTATACTGAAGCAGAATGCTCATCTACATCTGATATTCCAAAACCTGTCCACGCAAGAATATCTAGTGCAGTTAACATGACATTTCCACATAACGAATATGTTTTACCTAGTAATGTTGGAAGGAATTTGTTTAATATTGCTCAAGGTACTCAATTCGTCAGACCTTCATATGATACAGGATTTCCCTACGATACTAATATGTACCCAACCCAATACTATCCCAATAATATAACCGCATACTACGATTCGGGTGAAAATCAAGGCATCCAAAATCATAACCCGAATAATTACAATCGAATATCCAATGATCATGACAATTGA

Protein

MLLTALTPHSNTYENNPWKNQHFATPWPAIPENITKNESSKPRKYKSKRVRTSFTWDQQLMLEQTFEKTQYINGTDRRELAQKLGIGEKCIKIWFQNRRMKNKRKSSESSDSYTEAECSSTSDIPKPVHARISSAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVRPSYDTGFPYDTNMYPTQYYPNNITAYYDSGENQGIQNHNPNNYNRISNDHDN

Uniprot

A0A0I9RJ69 H9JA52 A0A0I9QQQ1 H9JAD9 A0A0I9QQP9 A0A2A4IXJ9 + More
A0A060DCM0 A0A212F1K2 A0A060DCN3 A0A060D712 S4PSG2 A0A194Q328 A0A194R9J7 A0A0L7LFD2 A0A0L7LJX7 A0A1I8MSS1

Pubmed

25340822 19121390 22118469 23622113 26354079 26227816 + More
25315136

EMBL

BK008856 DAA64848.1 BABH01009132 BK008857 DAA64849.1 BABH01009133 + More
BK008850 DAA64844.1 NWSH01005891 PCG63870.1 KJ739620 AIB07876.1 AGBW02010865 OWR47612.1 KJ739641 AIB07901.1 KJ739644 AIB07907.1 GAIX01013843 JAA78717.1 KQ459551 KPI99962.1 KQ460473 KPJ14508.1 JTDY01001355 KOB74094.1 JTDY01000835 KOB75725.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240 UP000037510 + More
UP000095301

PRIDE

H9JA52 H9JAD9

Pfam

PF00046 Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR000047   HTH_motif
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom
IPR020479   Homeobox_metazoa

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A0I9RJ69 H9JA52 A0A0I9QQQ1 H9JAD9 A0A0I9QQP9 A0A2A4IXJ9 + More
A0A060DCM0 A0A212F1K2 A0A060DCN3 A0A060D712 S4PSG2 A0A194Q328 A0A194R9J7 A0A0L7LFD2 A0A0L7LJX7 A0A1I8MSS1

PDB

2ME6 E-value=1.11555e-08, Score=139

KEGG

101741023 no KO assigned | (RefSeq) homeobox protein MSX-2-like

GO

GO:0005634 GO:0006355 GO:0043565 GO:0003677 GO:0008270 GO:0033177 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

218

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01712

outside

1 - 218

Pi

138.224551

Theta

149.254404

Tajima's D

-0.232301

CLR

1.076145

CSRT

0.305284735763212

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics