Silkworm Genome Informatics Database

Gene

KWMTBOMO02738

Pre Gene Modal

BGIBMGA003721

Annotation

Zinc_finger_protein_782_[Papilio_xuthus]

Location

Bomo_Chr5(-):9921749-9932646 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.558

CDS

ATGCCAATCATAAAGGATTTGTGTAGATTGTGTGCTACTCAGGATGAATTCTCCAAAGATTTGTTAGATGAAAGTAACAGAAATGTTTTAAACCTTATAGAAGATTTCCTGCGGATAATAATTTGTGAGAACGATACTCTACCAACAAAAATTTGCTTAAATTGTGAAGAAAAAATGGTGTCTCTTCAACTTTTCATATTAGAATGCAACAAAACACAAGAAGCATTATCGAGTATGCTCATGGATTTGGAAACCAGTGAATTAGATGAAAAAAAAGATGATATTCTTTTGACAGTCACAGATGTCCATATCAAATCTGAGGTCAAAGATGAGAATGCTGACTATACAATAAATACAGCAGTCCCAGACTTACTTGCTTATCAAAAAAGTGAAGAGTTATGTGATTATCAAAGCAATGACATTAGTTGTGGTGATGATGATGATGAAGACGCATATTCAGATGATAATATTACAATTGCATCTTTGAAACTTCTCACTAAGAAGGAATTAAAAAAGAAAATACCTACAGAAGAAGACACTAGAAATATGAAGGAAATTTTGAGAAAGGATAATTTGAAAATAAAAGATTTAGTTAAATTAGAATGCGTTTTTTGTGAGGAACAAAAAATGCAGACTTGGAGTATGTTACAATACCATTACGCAAAAGTACATCATTGTAAGCCAGTCGTATATTGTTTATGCGGCCTAGAAATAAAATCTAAATCAGTGCTTTACAAACATTTATCTGATCATAAAATAGAAAGTCGAAAGTTAAGGAAGGCCGAAAATGGTGATAGCACCGAAAGTGGGAAAGACAGTGAGCAGTATCCTAAGCAAAAAGTCAGTGACTTTGTGAATTTCACCTGTGTCGACTGCCACAAGAAATGTTCCAGTTGGTATAGTTTAAAATCTCATTGTATAGCGGCTCATAAAACATTGCCCGTCGTCAAATGTGTTTGTGGGATAGTGCTTAAGTCTAAATCCATAATGTATAAACATGTAAATGATCACAGAAATCCCAATATGTTTTCATGTGATAAATGCCCGAGAATAACAAAAACGCTATCGGCCATGAACAAACACAAATTCAAGCATATTCCGAAAGCGGATAGAAAGTATCCCTGTTCTTCGTGCGAGAAAACGTTTAAAACAAAAGAAACATTAAAATCACACGAAAGATCCCACATACCTGTACAGGAAAGAAAGATATTCAATTGTGAAGTTTGTAATATGAAGTTCACGACTCGTTCGTCTGTCGTCTCCCACAAGCGCGTCGTTCACGACAAGATCAAAGCGTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGGGAGCTGCGGCAACATCGCGCCATACACAGCGACGACAAGCCGTTCGTGTGCGATAAATGCGATAAAACTTTCAAAACGTATTCAAACCTGAAGACTCACATGGACATCCACGAGGACACGTCGTACGAATGTTTCATTTGTCGACGCGTGCTGAACAGTCGCCGGACGCTACGCAAACACTTGCTGGTCCACGAAGACAAGTGCCGGCACGTTTGCTCGTATTGCAACAAAGCGTTTAAGCGAAGGCAAACTTTGAAGGTTCACATGTACACCCACACTGGCGTCAAGCCCTTGACGTGCAAGCTGTGCGACGAGCGGTTCGCCTACGCGTCGACGCTGCGCTCACATCGCATGCGCTGCCACCCGGAGCTCATGGTCCCCGACGGACGGGCTGCCTACCCAGCCGCCAACTACAACCACGTGCCTGTCTCCAATAATTACATAAAAAACGATATGGCTCCGGCGAATCCTGTAGCTAAAAACGAAGTGGAAGCATTGTAG

Protein

MPIIKDLCRLCATQDEFSKDLLDESNRNVLNLIEDFLRIIICENDTLPTKICLNCEEKMVSLQLFILECNKTQEALSSMLMDLETSELDEKKDDILLTVTDVHIKSEVKDENADYTINTAVPDLLAYQKSEELCDYQSNDISCGDDDDEDAYSDDNITIASLKLLTKKELKKKIPTEEDTRNMKEILRKDNLKIKDLVKLECVFCEEQKMQTWSMLQYHYAKVHHCKPVVYCLCGLEIKSKSVLYKHLSDHKIESRKLRKAENGDSTESGKDSEQYPKQKVSDFVNFTCVDCHKKCSSWYSLKSHCIAAHKTLPVVKCVCGIVLKSKSIMYKHVNDHRNPNMFSCDKCPRITKTLSAMNKHKFKHIPKADRKYPCSSCEKTFKTKETLKSHERSHIPVQERKIFNCEVCNMKFTTRSSVVSHKRVVHDKIKAYVCDLCGYACGTNGELRQHRAIHSDDKPFVCDKCDKTFKTYSNLKTHMDIHEDTSYECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGVKPLTCKLCDERFAYASTLRSHRMRCHPELMVPDGRAAYPAANYNHVPVSNNYIKNDMAPANPVAKNEVEAL

Uniprot

H9J2I4 A0A2A4JZG5 A0A2H1WW42 A0A194PQ43 A0A194RG09 A0A1E1WMT5 + More
A0A212FIY1

Pubmed

19121390 26354079 22118469

EMBL

BABH01007983 BABH01007984 BABH01007985 BABH01007986 NWSH01000357 PCG77034.1 + More
ODYU01011505 SOQ57280.1 KQ459597 KPI94859.1 KQ460207 KPJ16748.1 GDQN01002752 JAT88302.1 AGBW02008321 OWR53684.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151

PRIDE

H9J2I4

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J2I4 A0A2A4JZG5 A0A2H1WW42 A0A194PQ43 A0A194RG09 A0A1E1WMT5 + More
A0A212FIY1

PDB

5WJQ E-value=1.1816e-19, Score=239

KEGG

101746862 no KO assigned | (RefSeq) zinc finger protein 660

GO

GO:0003676 GO:0008270 GO:0005634 GO:0046872 GO:0005667 GO:0005737 GO:0006631 GO:0006635 GO:0006281 GO:0048384

Length:

612

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00035

outside

1 - 612

Pi

222.712348

Theta

169.473243

Tajima's D

0.944127

CLR

0.095644

CSRT

0.646117694115294

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics