SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02618
Pre Gene Modal
BGIBMGA011313
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location
Bomo_Chr5(+):7205918-7212016      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.081
 

Sequence

CDS
ATGTCTGGGGGGTCACCTCCCCCCAATATCAGCACACCCGGTCCGTCCCGAAAGGGACATCAGGCAATAGCGGGTTCACCCGCTTTTTGCTCCCTACCTGCTCGCCCGGAACTAGGCACCGGAACGGACGACCGGCCCGGTCCTTCGGGCGCGGCCCGAGGGTCACCGAGGATCGGTCCGGGGGAAAGTTTCTTTCCCTTACCGGCAGATTGCTCGGGGTCCCTTCGGCCGCGCAAGAAGGCGAGGTCCGAGTCCGACCGGAGCTCTTCCGAGGCAAAAGATAAGCGCCCCCGGATAGGACCGTCATCTAAATCCTTAAGCGAGATGGAGGGGGACGAGGCTGAGGACAACGAGGACACAACCTCGTCCGAGGACTCGTCCTCTTACGACAGCGAATCCTCGGGCTCGTCCCACTCCACCTCTAAGAGTGTGGAAAGAACCTCCCCAAAAAAGAAACCAATTCCTAAACCTAGGAGGAGTCTAGGGATGGTGGAGGTCCACCCAGTAAAACAGCTGCGTACTCCTCCTCGGTCCCCTTCTCCAGCCATTTCTCCCATTCCGTCGGTTAGACGTAGGGGTGCCCCCACCTTAAGCAGCACGGTGGGCAATCTAGAATCAACTAGATATATGGACCTTGAGTCTACCGCCTCCCACCCTAAAATTACACCCAATCCCATTCCATCTCCAGTACCTTCCACCTCCTATGCTGCAATAGCAGCAACACAAAAGCCATCGACCACGACTCATAGACCAGAGTTAACCAAGTCCCCTGCTCCAGGAGGGATCCGTGCTAACGAGGCACCCCGCCGCCACCCACCTATTATGGTGGAAGCGCTCCCGAACTGGTCTCGCCACATGGCGGCCATAAGGGAGCGCTTGGGGCGGGTCCCGTCTGTGCGACCCTATGGAACAGGGTTTAGATTTCTGCCCGCGTCGGCAGAAGAATACAGGGTGGTTCAAGCCTACCTCGCGGGGGCCTCCTCCGCGGACAGCGCCGTAAAGTGGTACTGTTATGCGTTAGAGGAGGACATCCCCGCGAGGGTGGCGATTCGAGGCCTGCCCGCTGACACCGACGCGGCAGAAATCATTAACGCCCTAAAGGAGCTGGGGTTCCCGGCCCGCTACGCCCGGTGCATAAGGGCAAAGAGAGGGAGGCCGGGTTGCGTATTTTTCGTAACCCTTGACCACCTCTCCAAGGAAGGCCTCGCCCGCTTGTACGCAGTTGAAGAACTGCTGTACCTGCCGGGGGTGTCAGTTGAGGGATGGCGTCCGAACCGAGGACCGGCGCAGTGCCATCGCTGCCAGGCCTTCGGACACGCCTCCACCAACTGCCACCGAGCGGTCCGCTGTGTGCGATGTGCGGGCGAGCACATCGTGGCGGACTGCCCGAGGCCAAGGGAGGGACCCCTCACCTGCGCCAACTGCGGGAAGGGCCACGCCGCTATTGATAAGCGGTGTGTGGTCTACCGCAGGAGGGCGCGGATGATGGGGGTCGCTATTCCTCCCCCCGTACCGCAAGCAGCGACGCGTGCCAGCCAAGCCCCTACCCCCGCTCCACGTCTCGGTCCACGCCCATCTCTGAAGGGTAAGGGCAAGGGGAAGACTTCTCAACCCCCCACTCTCCCTCCGGTTATAGAGCAACCTGCCACTGTGGAGGCCAACCCAACAGCGGCCACCCTGATGGCAGAAGCAAACCCGCAGCGAAAAGCTATAAAGCCGCGACCTGCCCCTCGTTCCAGTAATAAGGCAGCATTCAACTTACAAGCTGCCTTAACTACAACTACAACAAAAACTCAAAAAAAAAATAAGAAAAAAAAAATAAAGGCCAAAGAAAAAAAAATAAAAAAAGCAATGGAAGAAGCAGCTGCCCTGGGAGAAGGCCAAATTGAGCCAGCTACCGAACCTCCATGCCCAATGGAGACGACAGCCAGCGACCCGCTCCAGAACGATAACATCACTCTGGGCGACTCACAGCCCCCATTACCACCCCGCCCGCAGAGAGAGCGGCGCAGTGGCCGACAGGACACGCAGCCTGCCGGCTTCGCTGCCTGGCTTCTCTCCCTGTGGGAGAAATTGTCCGAGGAGCTGCGCATCATCTATTGGAACCCCGACGGGATAGGGTCCCGGAGGTCGGAACTGATCCGACTCGCCCAGGAGTATGACCCGCAGGTTATCCTCCTGGGCGAGACCAAGCTCAAACCTCGACAAGATTTTAGGATGCCCAACTACTTCGTGTACCGACGGGACGAACTGACCTCCAGCGGGCGCCCGTTCAGGGGCACTGCGGCGCTCGTCAGGAGGGACGTGGTGCACGAGGAGCTTGAGCTACTGACCTTCGCCTCTACCAGAACGGTCGGGGTGAGGGTCCACGTACCGGGGGCCGAATTGCGGATTTATGCCGCGTATCGACCCCCGGGTCCTGATTTTGTCGAGGACGATATTAGACGGGCCTTGAACCATGATCGCCATCCGGCCTTGGTGGTCGGGGACCTCAATGCGAAACATGTCGCTTGGGGCTCCCGAATCATCACGCCGCCCGGAAGGCGATTGTACGAGGATGCCGAAAGGGGGGACTACTGCGTGGTCGGCCCCAACGAACCCACACACGTTCCAACGTTGGCCCGGTACCAACCGGACGTATTGGACGTGTGTGTTCACAAGGGGCTACAGTGCCCTCTAGCGATAGAGGCACTGTACGACCTGAGTACCCCTCACCTACCGATCTTGGTCACGGTGGGTTTGGGGCTCACTCGGGTCGCGACATCCCCTCTCAGGCCTAGGGTCGACTGGCAGTCCTTTACGGGACTGCTGGCCGACCAATCCTTGTTTCAAGACCCGTCTACCCCTGATGAGGTCGACACGGCGGCTTCCCGTCTCGTCGACACCATCAGGGGAGCCCTGGACCAAGTGACGACTCTGGTACCCAGCGGGGGGCCCAGAGCGGAACTCCCGGTGCACCTCAAGACGTTAATTCGTCGGAAGAGGGCACTGAGGAGGCTCTGGGCGACATCTAGGTGTCCCAGGATTAAGCGCGAGCTCAACCGACTTGAGGGTGAGCTGGCGACTAAGATGCGGACTTACCGGGGTGATTCCTGGGAGGGGGGACTGTTGGACGCGTCCGACGACCGTACGATGGCCCCCCTTCACCGCATCTGTCGCCGGCTCACCAACAAGCCTTCCCCCACTTGCCCCTTGGAGGACGAGGGGGGAAGACGGTGTTTTACACCGTTGGCTCGTGCTGAAGTCCTGGCCAACTCGCTGGAGCGGCAGTTCACTCCGAATGTCTCTGCACCCTCGATGGCTGCATTCCATCGCGAGGTGACAGAGGGCGTAATCCAATTCCTCAAACCGGAATCGCCGGGAGTCGAGCTGGGAGATGACGACTTAGTCACTCCCAGCGAGGTGCGCCTCCTCATCAAGTTGATGAAGAGGCGCAAAGCCCCCGGCGAGGACGGTATTCCTCCCCTCGCCTTGCAAAACCTCCCTCCCTCAATCGTGTCAGCAATGACACGATTGTTCAATTCCATTCTCCGGGTAGGACACTTCCCTGGAACTTGGAAATTGGGCAAGATTATCGTCTTGCCCAAACCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTCTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTCCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCGGACCGGCGAAACTCGGGCCAATACACGGTCGCGGTCCTTCTCGATATCGAGAAGGCCTTCGACCGTGTGTGGCACGAGGGGCTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTACCTGGAGGGCAGAACCTTCTTTGTCGCGGTCGAGGGCGCACGGTCTTCCGTGCGTCCCATTACGGCCGGGGTTCCCCAGGGTAGTGTCCTATCTCCTATCCTATACGCCCTCTACACCAATGACATCCCCACCCTGGAGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAGGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGCCTCCGAGGTGTGAATGTCGAGTTCAGGACCACGGTCCGGTATCTCGGATGCGACATCGACCGCTCTTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGGCTCGCGCGGCCATGTTCTTGTTGCGGCCGGTGTTTGCGTCCGGGCTTCCGACCAGGACCAAACTCGCCATTTACAAGACATACGTCCGTTCCCGCCTCACATACGCTGCTGTGGCCTGGTATCACCTGTTGTCGCCGTCCCAGCGATCTAGGTTGCAGGCCCAGCTGAGTCTTTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGGGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAACATAGCCCCGCTGCACGCCAGACCACCGGATGGAGAGCAGCAGCCGCCCCCGGAAGAAGAAGGGAAGAAAGAAGAAAGGAAGAAAGAAGAAGGAAGAAAGAAGATGAAGAAGTGA
Protein
MSGGSPPPNISTPGPSRKGHQAIAGSPAFCSLPARPELGTGTDDRPGPSGAARGSPRIGPGESFFPLPADCSGSLRPRKKARSESDRSSSEAKDKRPRIGPSSKSLSEMEGDEAEDNEDTTSSEDSSSYDSESSGSSHSTSKSVERTSPKKKPIPKPRRSLGMVEVHPVKQLRTPPRSPSPAISPIPSVRRRGAPTLSSTVGNLESTRYMDLESTASHPKITPNPIPSPVPSTSYAAIAATQKPSTTTHRPELTKSPAPGGIRANEAPRRHPPIMVEALPNWSRHMAAIRERLGRVPSVRPYGTGFRFLPASAEEYRVVQAYLAGASSADSAVKWYCYALEEDIPARVAIRGLPADTDAAEIINALKELGFPARYARCIRAKRGRPGCVFFVTLDHLSKEGLARLYAVEELLYLPGVSVEGWRPNRGPAQCHRCQAFGHASTNCHRAVRCVRCAGEHIVADCPRPREGPLTCANCGKGHAAIDKRCVVYRRRARMMGVAIPPPVPQAATRASQAPTPAPRLGPRPSLKGKGKGKTSQPPTLPPVIEQPATVEANPTAATLMAEANPQRKAIKPRPAPRSSNKAAFNLQAALTTTTTKTQKKNKKKKIKAKEKKIKKAMEEAAALGEGQIEPATEPPCPMETTASDPLQNDNITLGDSQPPLPPRPQRERRSGRQDTQPAGFAAWLLSLWEKLSEELRIIYWNPDGIGSRRSELIRLAQEYDPQVILLGETKLKPRQDFRMPNYFVYRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIRRALNHDRHPALVVGDLNAKHVAWGSRIITPPGRRLYEDAERGDYCVVGPNEPTHVPTLARYQPDVLDVCVHKGLQCPLAIEALYDLSTPHLPILVTVGLGLTRVATSPLRPRVDWQSFTGLLADQSLFQDPSTPDEVDTAASRLVDTIRGALDQVTTLVPSGGPRAELPVHLKTLIRRKRALRRLWATSRCPRIKRELNRLEGELATKMRTYRGDSWEGGLLDASDDRTMAPLHRICRRLTNKPSPTCPLEDEGGRRCFTPLARAEVLANSLERQFTPNVSAPSMAAFHREVTEGVIQFLKPESPGVELGDDDLVTPSEVRLLIKLMKRRKAPGEDGIPPLALQNLPPSIVSAMTRLFNSILRVGHFPGTWKLGKIIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLEGHLRAWEEDVRLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTTVRYLGCDIDRSLSMVAHVNRVIGQARAAMFLLRPVFASGLPTRTKLAIYKTYVRSRLTYAAVAWYHLLSPSQRSRLQAQLSLSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHNIAPLHARPPDGEQQPPPEEEGKKEERKKEEGRKKMKK

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=8.21756e-06,     Score=124

Ontologies

KEGG
101739096    K08220 MFS transporter, FLVCR family, feline leukemia virus subgroup C receptor-related protein | (R
GO
GO:0003676   GO:0008270   GO:0008616   GO:0016020   GO:0043565   GO:0005515   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Topology

Length:
1610
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10387
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1610
 
 

Population Genetic Test Statistics

Pi
350.844476
Theta
180.561719
Tajima's D
3.102639
CLR
1.226638
CSRT
0.982050897455127
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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