Gene

KWMTBOMO02412

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr5(-):1548399-1551517      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.171

CDS

ATGGAGGTCGATGTTAAGACCCCTCATATCCCCGAAAGTAGCCAAGCCATTGATGTACAAGCCGTGACTGATGCCAACTTGCCTCAGTCGCAACCAACCTCATCTCAGCCCCTTCCCCCCCGCCCTCAGCGCGAGCAGCGCAGCGGTCGGCAGGCCTCACAGCCTGCCGGCTTTGCTGCATGGCTCCTCGCGCTCTGGGAAAAATTGTCCGAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAAACCCGCAAGAACGATCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAGGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTCACACTGGGAATGGGGCTCACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGCCTAGTCGACCTTCCCGCAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGATAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGTTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGTAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTAGAACCCCCGGCTATGGTAAGATAG

Protein

MEVDVKTPHIPESSQAIDVQAVTDANLPQSQPTSSQPLPPRPQREQRSGRQASQPAGFAAWLLALWEKLSEELRIIYWNPGGVKTRKNDLLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPAIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWAITRCPRIKRELNELEAELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAVMLERQFAPNNSAPSEAAFHQSVEESVVSLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGLALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   J9KPF1   + More
J9LC21   A0A2J7Q6J2   J9JS95   A0A2J7PBY3   A0A2J7QY69   A0A2J7PU96   A0A224X6Q4   A0A2J7QR37   A0A2S2NJB5   X1WLB2   V5GNJ2   A0A224XB44   J9LF86   A0A023EYS8   A0A2J7R4U3   V5GNF3   X1XGU0   A0A2S2NGV8   A0A2J7R7D0   A0A0A9YJ00   A0A2J7R098   A0A0A9YU04   A0A2J7QB68   A0A2J7RE85   A0A087UCW3   X1WN18   A0A2J7PMN4   J9KCZ4   A0A2J7Q9Z1   A0A2J7QES2   A0A2J7PSM7   A0A2A4K918   A0A2J7RQ52   A0A139WA11   A0A2H8TF37   A0A2J7PDM0   A0A224XHW8   A0A0N1PFV1   A0A2J7PVX3   Q9BPQ0   J9LF85   A0A2S2R9D4   Q9XXW0   A0A023F0I3   A0A224XIB0   A0A2M4CV52   A0A139W8G9   A0A069DX78   A0A2S2Q383   A0A069DZL8   A0A1Y1LKN6   A0A2J7QFL0   A0A224XF24   A0A023EZE6   A0A2J7Q0Q6   O96546   A0A2J7R2E1   A0A2J7R6U1   A0A2J7RKP3   A0A1Y1KFR3   A0A224X6R6   A0A023F069   A0A224X7Z3   A0A2J7PQB5   A0A142LX53   J9LYS0   A0A224X6S1   A0A087UGF5   A0A2S2QEE0   A0A2S2P6C4   P21328   A0A2A4IUM2   A0A1Y1K0C8   J9KKL3   Q93137   A0A2S2PHL7   A0A2S2NH02   A0A224X6W2   Q24335   K7IN67   A0A2M4BD83   A0A2S2N814   A0A2J7R8R8   A0A2S2N6Q7   A0A2S2P6S3   A0A0J7MTN6  

EC Number

2.7.7.49

Pubmed

28004739    25474469    25401762    18362917    19820115    26354079    + More
10333566    26334808    10380107    25527032    2463954    3040362    1714378    2441397    20075255   

EMBL

NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02023911    + More
ABLF02034467    GEZM01008457    JAV94772.1    ABLF02041767    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01017470    PNF24199.1    ABLF02028535    ABLF02028545    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01021205    PNF19912.1    GFTR01008279    JAW08147.1    NEVH01011985    PNF31054.1    GGMR01004661    MBY17280.1    ABLF02042518    ABLF02057746    GALX01005299    JAB63167.1    GFTR01008262    JAW08164.1    ABLF02017815    GBBI01004395    JAC14317.1    NEVH01007402    PNF35856.1    GALX01005359    JAB63107.1    ABLF02055645    GGMR01003407    MBY16026.1    NEVH01006736    PNF36716.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01008277    PNF34262.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01016302    PNF25823.1    NEVH01005277    PNF39135.1    KK119261    KFM75202.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01023979    PNF17579.1    ABLF02008463    NEVH01016340    PNF25410.1    NEVH01015305    PNF27092.1    NEVH01021925    PNF19341.1    NWSH01000032    PCG80496.1    NEVH01001347    PNF42959.1    KQ971729    KYB24751.1    GFXV01000908    MBW12713.1    NEVH01026386    PNF14434.1    GFTR01008254    JAW08172.1    KQ459265    KPJ02064.1    NEVH01020940    PNF20481.1    AB055391    BAB21761.1    ABLF02017813    GGMS01017365    MBY86568.1    AB018558    BAA76304.1    GBBI01003747    JAC14965.1    GFTR01008246    JAW08180.1    GGFL01004957    MBW69135.1    KQ973342    KXZ75569.1    GBGD01000389    JAC88500.1    GGMS01002992    MBY72195.1    GBGD01000415    JAC88474.1    GEZM01053022    JAV74219.1    NEVH01014858    PNF27387.1    GFTR01008038    JAW08388.1    GBBI01004571    JAC14141.1    NEVH01019964    PNF22161.1    AF081103    AAC72921.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01002716    PNF41415.1    GEZM01084969    JAV60363.1    GFTR01008269    JAW08157.1    GBBI01003810    JAC14902.1    GFTR01007929    JAW08497.1    NEVH01022639    PNF18527.1    KU543687    AMS38379.1    ABLF02041861    GFTR01008271    JAW08155.1    KK119692    KFM76444.1    GGMS01006359    MBY75562.1    GGMR01012283    MBY24902.1    M22874    M38643    NWSH01007753    PCG62823.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02029306    ABLF02029314    ABLF02060138    U07847    AAA17752.1    GGMR01016296    MBY28915.1    GGMR01003864    MBY16483.1    GFTR01008260    JAW08166.1    M17214    AAA28508.1    GGFJ01001822    MBW50963.1    GGMR01000676    MBY13295.1    NEVH01006721    PNF37225.1    GGMR01000226    MBY12845.1    GGMR01012443    MBY25062.1    LBMM01018163    KMQ83860.1   

Proteomes

UP000218220    UP000007819    UP000235965    UP000054359    UP000007266    UP000053268    + More
UP000002358    UP000036403   

PRIDE

Q9BPQ0    Q9XXW0    P21328    Q93137    Q24335   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   J9KPF1   + More
J9LC21   A0A2J7Q6J2   J9JS95   A0A2J7PBY3   A0A2J7QY69   A0A2J7PU96   A0A224X6Q4   A0A2J7QR37   A0A2S2NJB5   X1WLB2   V5GNJ2   A0A224XB44   J9LF86   A0A023EYS8   A0A2J7R4U3   V5GNF3   X1XGU0   A0A2S2NGV8   A0A2J7R7D0   A0A0A9YJ00   A0A2J7R098   A0A0A9YU04   A0A2J7QB68   A0A2J7RE85   A0A087UCW3   X1WN18   A0A2J7PMN4   J9KCZ4   A0A2J7Q9Z1   A0A2J7QES2   A0A2J7PSM7   A0A2A4K918   A0A2J7RQ52   A0A139WA11   A0A2H8TF37   A0A2J7PDM0   A0A224XHW8   A0A0N1PFV1   A0A2J7PVX3   Q9BPQ0   J9LF85   A0A2S2R9D4   Q9XXW0   A0A023F0I3   A0A224XIB0   A0A2M4CV52   A0A139W8G9   A0A069DX78   A0A2S2Q383   A0A069DZL8   A0A1Y1LKN6   A0A2J7QFL0   A0A224XF24   A0A023EZE6   A0A2J7Q0Q6   O96546   A0A2J7R2E1   A0A2J7R6U1   A0A2J7RKP3   A0A1Y1KFR3   A0A224X6R6   A0A023F069   A0A224X7Z3   A0A2J7PQB5   A0A142LX53   J9LYS0   A0A224X6S1   A0A087UGF5   A0A2S2QEE0   A0A2S2P6C4   P21328   A0A2A4IUM2   A0A1Y1K0C8   J9KKL3   Q93137   A0A2S2PHL7   A0A2S2NH02   A0A224X6W2   Q24335   K7IN67   A0A2M4BD83   A0A2S2N814   A0A2J7R8R8   A0A2S2N6Q7   A0A2S2P6S3   A0A0J7MTN6  

PDB

6AR3     E-value=0.000788553,     Score=105

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519  

Length:

936

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03626

Exp number, first 60 AAs:

0.00063

Total prob of N-in:

0.00037

outside

1  -  936

 

 

Pi

140.605022

Theta

157.767727

Tajima's D

-0.443287

CLR

640.099902

CSRT

0.255187240637968

Interpretation

Uncertain