SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02316
Annotation
gag-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.056
 

Sequence

CDS
ATGGACGCTGTATTTGCGGAATTTCTCCGGCTTCGCTACCCAAAGCTCACTTCCGAGTTTCAGGCCTTCAAGGCCGATCACACCGCGAGCCCTCTCGTGGACTCTCCCGAGCTCGCTGCTCCTGCGTCGCCTGTACCTGCGTGCAAAGCTTCTGCATCGAGCACCGCAGCCTCCGTCGTGCCTGCCGTTCCCACGTCGCCTATACTGGCGAGTAAAACTGCTGCGTCGTCCGCCGTGGTCACCGTTCCAGCAGCGCGATCATCCGCGGCCTCCGTCGCGCCCTCCAAAACACCTACTCGTAGGTCACCTGCGCCCGCCTCCTCGTCCTCCGACTCTGACTCGGAGATGGAGGTCGACCTCGCCCCCGCCTCATCGATGGATGGATTCACCCTGGTGCAAAAGGGTAAGAAGCGTGCCGCGGAGTCTCGAGCTCCCGCGGCCGCTAAAATTAGCAAAGCCGCGAACGCGTCGCGCCCCCGCCCTCAGACTCCCGTTGCGCCTCCAGCCCGTGCCACTCCGTCGCCGCGTCCGGTGGCACAAAATAAAACCCAGACCCCTCCCCCGGTAATCCTTCAAGAGAAGGCAGCTTGGGAACGAGTTTCCCTGGCCCTTAAGGCCAAAAATATCAATTTTACGAATGCCCGTAACCTCGCGAACGGCATTCAAATTAAGGTTCGAACACCCGACGACCATAGGGCCCTGTCTTCTTACCTCCGTAAGGAGCGTATAAGTTTCCACACGTATACGCTCCAGGAGGAGCGCGAACTCCGTGCCGTTATACGTGGCATCCCTAAAGAGTTGGATGCCGAGCTCGTCAAGGCCGACCTTCTTGAACAAGGCCTACCGGTTAACTCCGTACACCGCATGCACACAAGCCGCGGAAGGGAGCCATATAATATGGTTCTCGTCGCCCTCCAGCCTACCCCCGAGGGTAAGCAAATATTTAACATCCGAACGGTCTGTAGCCTTTCCGGAATCGCAGTCGAAACCCCACACAAGAAAGGCACACCTAGCCAGTGCCATAACTGCCAATTATACGGGCATTCTTCCCGTAACTGTCACGCGCGCCCCCGATGCGTCAAGTGCTTAGGCGATCACGCCACGGCCCTATGCACTCGCGATCAAAAAACTGCGACGGAACCGCCTAGCTGCGTCCTGTGTCGAACACAGGGTCACCCCGCAAATTACCGCGGATGCCCCCGAGCCCCGAAAATAAATCGCCGCGTCGCCCGCCAAAACCGCCTCCGAGCTTCCGGCCCAGACATCAAAGCCTCGGCACCCTCTGTGTCGCAGGCTAAGTCAGCGTTCGTTCCGGCGCCGGTGCCCAGTGTCTCGGCCTGGGCGAAACCGCTGCCGTACATGAACACGGCTACAACTCCCTCCTCCGCGATTCGTCCCGCCCCCGCGACTCGTCCCTCTCCCGCGACTTGCCCTCCGACCGCGTCCGACAATCTCGCTTTAGCGATCGACTTCTTTCAGTCGATCAACTTTGAGCGCGTTAACGCTTTGGGCGACGCCATTCGCGCTGCCTCCACTGCACAACACTTTATCGCCGTTGTGCAAGAATACGCCGACGTATACGCGTCATTAAATACGTACGTCCTCCCCTCACTCCGCCGGTAA
Protein
MDAVFAEFLRLRYPKLTSEFQAFKADHTASPLVDSPELAAPASPVPACKASASSTAASVVPAVPTSPILASKTAASSAVVTVPAARSSAASVAPSKTPTRRSPAPASSSSDSDSEMEVDLAPASSMDGFTLVQKGKKRAAESRAPAAAKISKAANASRPRPQTPVAPPARATPSPRPVAQNKTQTPPPVILQEKAAWERVSLALKAKNINFTNARNLANGIQIKVRTPDDHRALSSYLRKERISFHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTSRGREPYNMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQAKSAFVPAPVPSVSAWAKPLPYMNTATTPSSAIRPAPATRPSPATCPPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR

Summary

Pfam
PF07530   PRE_C2HC
Interpro
IPR006579   Pre_C2HC_dom       
ProteinModelPortal

Ontologies

GO

Topology

Length:
540
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01473
Exp number, first 60 AAs:
6e-05
Total prob of N-in:
0.00058
outside
1  -  540
 
 

Population Genetic Test Statistics

Pi
2.100498
Theta
2.32264
Tajima's D
-0.321325
CLR
117.902729
CSRT
0.304584770761462
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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