Silkworm Genome Informatics Database

Gene

KWMTBOMO02277

Pre Gene Modal

BGIBMGA003087

Annotation

PREDICTED:_zinc_finger_protein_271-like_[Bombyx_mori]

Location

Bomo_Chr4(-):15919771-15938795 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.319

CDS

ATGGAAGTTTTTCTTTATAATTCGACTGTTTGTAGATTATGTGGTGAAGAAAATGATAACGGCACCGTGTTATATGTACTTGAAGATAATAATACAAGCTTGAGTGAAATTGTTAACACGTATTTACCGATAAAGGTGTCCGATGATGGTCAACTACCACGTACAATTTGTCCTGGATGCACTATACAGCTGGAAGCCACCGTAGAATTCTTGAATCTGATTATAAAAGGACAGAAAACACTTCGAGAACTGCATCAAAGAGAGATTGAATATAAGAAATCAACTCTCAAGTCTACAGAAGAAGTTATAACTGAGGATATTGTGTATGAAGTAAACACAACAGATGGGGTCTACCAAGATGATCACATAGTAGCTCTTCAAGTGGCTGGCCTGGAGAAGCCAAAGCGTAAACGTGGCCGTCCACCGAAAAAGCAGAAAACACCTGAAGAATTGATCCAAGAAGCTGCAGCAAGAGAAGAGCAACTGAAAGCTAAGAAGCGAAATGAAAAGGAGGAGGAACTTAATGGTAAAAGAAGGAGAAAGACCCCCACTCGTTTTAAGGAAGTTGTGCAGGGTAAGGAACTAGAAAAAATTTTCAAAGAGGAAGGTGTCATAGATGATGAATTGGATGGAGATATAAAGAGTGAAGTAGTCATGGACTCTAAGTCTACTTCTCAAGAAGAAGAAGTGATCGGACATAGAGAGGACTCCGGTGAACTAGTTGTCGTTGTGAAAGGCAAAGGACGTGGTAGACCTAAAGGTCGGCTCCGGCCCAAGCAGGAGCAGTGCGCCATCTGCGGCGCGTCGTACTCGTGCGTGGGGCGCTACATGTCGCACGTGGCGGCGCACGGGCCCGTGCTGTACCAGTGCGCCGCCTGCCTGCTGGCGCTGCCCAACCGCCTCACCTTCACGCAGCACCAGCGCGACCACGCGCACGCCGGACAGCGCGTCATCCCCTGCACCGCGCGACAACTGGCCGAAGCTCAAGAAAAATTGGAGTCTTCAAATCAAATGGGAATCGTATCGATTGAAAACATCGCGAAAGACACTGCAGCATCCGCTGATGCGCTGCCGGACCTCGACCCGGAGCCACCGGGCACCACCACGGGGCAGGCAGAGATTGTGAATGACAACGCACCGAAAACGGAACCGGTCGATCCGCTCGGCGCCGATGCCACTGAGGACCTAGACACTAATGAAAACAAAGAGATAGTGCTCAAGACTGATGAAGATGAAAGCACTGACATGGTACAGTTCAATTCAAAAGGGAAACCGAAACTCAAGTGTAATCACTGCGACAAGCTTTTCAGTAGCAAACAAAGCAAGTCAGTTCATATAAAGGCGGTGCACCGCGGCGAGCGCGCGCACGCGTGCGGGGAGTGCGGCGCGCGGTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGCCACGCACCGCCGACACTCCGCCGCGCGGTACGCCTGCGACCTCTGCGGGAAGGTTCTGAACCATCCGTCGTCGGTGGTGTACCACAAGGAGTCGGAACACGCCGGTCAACGCTACGTCTGCAGCAAGTGTGGGAAGAATTTCAAACATAAACAATTGCTTCAGAGACACCAGCTCGTCCATACGCAAAACAGACCGTTTATTTGTAAGGTTTGCAACACTGCGTTCAAAACGAAAGCCAACCTAGTCAACCATCAGATACTTCACACCGGCGTGAAGAAATATGCCTGCGAGATTTGTAAACAGAAATTTGCTCACAAGACGAGTCTTACGCTGCATCTCAGGCGACACACTGGTCTAAAACCGTTCACTTGCAATACATGCGGCAAAAGTTTCACCCAGAAGGGCAACCTGTCGGAACACGAGCGCATCCACACCGGAGAGAAGCCCTTCAAGTGCGCCCTCTGCCCGAGGAGGTTCACCACGTCCTCGCAGCACAGACTCCACGTACAGAGACATAACGCAGGGACGCCATTTGCTTGTTCTTCATGTCCTAAACGGTTCGTGTCGGGCGCGAGCCGGGCGGCGCACGAGCGTCGCATGGCGGGCGGCGCGGCGCACTCGTGCCCGCACTGCGAGCGCACGTTCTGCGAGCGGTGGGCGCTCACCAAGCACATGCGGCGGCACACCGGGGAGCGACCCTTCCGCTGCCACCACTGTCCCAGGGCCTTCGCCGACGCCTCCAACCTCAACAAGCACAGAAAGCACGTGCACAAGCAAATAAGTTTGCTGACGAGCGCGAACCAGCCCGTAGAGGTACAGCAGCGCGAGGAGCAGGAGCGCGTCGTATACGTGGCCTACGACGTGGACGACGCCGACTCGCCCTCCTTCCACATACTGGATCCAGAGCAGGCAGAGAGTCTGGACGAGAGCAAAGTGGTGTCGACGCTGTACTCCGAGGAGTCGCTGCTGACGTCACGCGCCGACCCCGTGCCGGTCACAGACGAGCAAGGCAACCCTCTACATTTCACCATGCAGGACGGCACGCGACTCGCCATCACTTCGTCTGACGGCAAAACTTTGCAGGTCGTCACCGAGGATGGCCAGACGATTCCAGTTGAGATTAACGGCTTTGCGGAAGATGAGGAGCTGCAGAGTCAGGACACGATCGTGCACCAGCTCGACCTGCACAAGTCGGTGGCCGCGGCCGAGCCCGTCACGCACTTCTTCACGATCGTCTAG

Protein

MEVFLYNSTVCRLCGEENDNGTVLYVLEDNNTSLSEIVNTYLPIKVSDDGQLPRTICPGCTIQLEATVEFLNLIIKGQKTLRELHQREIEYKKSTLKSTEEVITEDIVYEVNTTDGVYQDDHIVALQVAGLEKPKRKRGRPPKKQKTPEELIQEAAAREEQLKAKKRNEKEEELNGKRRRKTPTRFKEVVQGKELEKIFKEEGVIDDELDGDIKSEVVMDSKSTSQEEEVIGHREDSGELVVVVKGKGRGRPKGRLRPKQEQCAICGASYSCVGRYMSHVAAHGPVLYQCAACLLALPNRLTFTQHQRDHAHAGQRVIPCTARQLAEAQEKLESSNQMGIVSIENIAKDTAASADALPDLDPEPPGTTTGQAEIVNDNAPKTEPVDPLGADATEDLDTNENKEIVLKTDEDESTDMVQFNSKGKPKLKCNHCDKLFSSKQSKSVHIKAVHRGERAHACGECGARFAYPRSLALHAATHRRHSAARYACDLCGKVLNHPSSVVYHKESEHAGQRYVCSKCGKNFKHKQLLQRHQLVHTQNRPFICKVCNTAFKTKANLVNHQILHTGVKKYACEICKQKFAHKTSLTLHLRRHTGLKPFTCNTCGKSFTQKGNLSEHERIHTGEKPFKCALCPRRFTTSSQHRLHVQRHNAGTPFACSSCPKRFVSGASRAAHERRMAGGAAHSCPHCERTFCERWALTKHMRRHTGERPFRCHHCPRAFADASNLNKHRKHVHKQISLLTSANQPVEVQQREEQERVVYVAYDVDDADSPSFHILDPEQAESLDESKVVSTLYSEESLLTSRADPVPVTDEQGNPLHFTMQDGTRLAITSSDGKTLQVVTEDGQTIPVEINGFAEDEELQSQDTIVHQLDLHKSVAAAEPVTHFFTIV

Uniprot

A0A2H1V658 A0A2A4JHE2 A0A194PMA0 A0A067R189 A0A232ENN2 K7JDH2 + More
A0A3L8DGI5 A0A2A3E7R1 A0A088A781 A0A1B6MNY3 U4UJ94

Pubmed

26354079 24845553 28648823 20075255 30249741 23537049 + More

EMBL

ODYU01000869 SOQ36279.1 NWSH01001395 PCG71391.1 KQ459598 KPI94561.1 + More
KK853004 KDR12604.1 NNAY01003108 OXU19960.1 AAZX01000032 QOIP01000008 RLU19534.1 KZ288353 PBC27322.1 GEBQ01002311 JAT37666.1 KB632348 ERL93167.1

Proteomes

UP000218220 UP000053268 UP000027135 UP000215335 UP000002358 UP000279307 + More
UP000242457 UP000005203 UP000030742

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2H1V658 A0A2A4JHE2 A0A194PMA0 A0A067R189 A0A232ENN2 K7JDH2 + More
A0A3L8DGI5 A0A2A3E7R1 A0A088A781 A0A1B6MNY3 U4UJ94

PDB

5V3M E-value=2.78674e-45, Score=462

KEGG

101736493 no KO assigned | (RefSeq) zinc finger protein 271-like

GO

GO:0008270 GO:0003676 GO:0005634 GO:0046872 GO:0008017 GO:0006289 GO:0004518 GO:0006281 GO:0048384

Length:

888

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00394

Exp number, first 60 AAs:

5e-05

Total prob of N-in:

0.00018

outside

1 - 888

Pi

280.670801

Theta

182.586457

Tajima's D

2.163544

CLR

0.242714

CSRT

0.906454677266137

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics