SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02188
Pre Gene Modal
BGIBMGA003135
Annotation
PREDICTED:_uncharacterized_protein_LOC106143636_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.437
 

Sequence

CDS
ATGGACATCAAGATTTCCGAGCCCGTTCTAGAGGATATAGGATCTGCTAGTCAAGATGAATCGAAACTATTTGAAAAAAACTTTAGACAAACGAGTTCAAAAACAGAAACATTTCCGGTGCTTAGAGACGAAAAAAGCTGTGACAGTGATACTCATAGTGAGGACCTTAGTTCTAACGATGAACAAAATAATGCAAACGGTAACTCTCATTTTTATGAGAGCAGTGACAGTAAAATAGACTATGCGGTAAAAATAGATGACAATGATACGTTAAGTGACATTGATGATATAAAAACGGATAGTGCATCTGCAGATAGTGAAGATTCAGCACTTGGCAGTCTACCTCCAGACACCGCTCCCAATGAAAGAGAAGAAGAGATTCAAGATAGATCAGAAGGTAGTGACTCAGGGTTTGGATCCGAAGCAATCGTAGATGCTAATCTACCTTGCTTTGATCTTTCACTTCCTTGCTCAAAAGAAGATAACAACGCAGATAACAAAAAAGAAACTGGCTCTATCGATAATAATGACGAAGAATTAAACAATACTACTGCCAAATTATCTCAGCCATGTTCACCTCTCAGAAGCAGCCTCAAAAGAAAACACAACAATGAGAATTCTGATGAACCTCAAACTAAAAAAAGAAAAGAAGGCATTAGATTCGACAATGTTACAGTATTTTATTTTCCGAGAGCTCAAGGATTTTCTTGTGTGCCATCACAGGGTGGTTCCACGTTAGGAATGGAATGGGAACATTCTCATATCCAAAAGTTTACATTGGCGGAACACGCTTTAGAACAAAGAAGACTGCATAGACAGATTTTGCAACAGTTGAAAAGTGAGCGAAATTCCTTGAAGGGTGACTTGCTTTCTTCAAGTGAAGACAGTGACACAGAAGAGGAAGCAAGTGATATATCTGAGTCAGAATTAGATTTAGATAATTACTATTTCCTACAACCTGTTCCAACAAGACAAAGACGAGCCCTTTTACGTGCAGCAGGTGTCAGGAAAATAGAGGGTTACGAAAAGGACGAATGTAGAGACATCAGGACGTCAAGAGAATTTTGTGGTTGTGCTTGTAAAGGATCATGTAATCCTGAGAATTGTTCGTGTAGCTTAGCTGGCATAAAGTGTCAAGTAGACAGGTTGAATTTTCCTTGTGGATGTACTAGAGACGGTTGTGGCAATACTACAGGACGTATCGAATTTAATCCAGTAAGAGTGAGGACACACTTCATTCAGACCCTCATGAGAATAGGTCTGGAAAAGAAAAATGAAGAGAATAAAGAAGCCGCCAAAAAGCAATGGCAACATACAACAGATATACATAATGCAAGCACAAACGGGTGCTTAACAAATCATCTTTACGAAAGGGAACGTTGTCTAAGACAAGAAGACGGCTTACTACGTGATGTTAATCTGACACCAAGAATAGAAGTCGAGTCGTGTGTGAATTCTGGGAACTACAATAATGTTCACTGCAATAACACACAAAGAAATATGCAAGATGGTTTATCTTTTAATTACAGCAATCATAACTGCAATCCTGGAAGCATTCATGAAAATGGCATAATTAGCTATGAAAGTAGTAATCCTCATCATCAGCATCATCACGCGGATGCATACACGTCGAACATAATACAAGGAAAGGGCCCACCTTACTCCGCTACGAATCCTATGGGATTCGATACGACTTCAAACATACACAGGTTTCCTTGTGATATGAATTACGCATATGATCAACACACAGCCGAAACACATCACTTCAAAGGATTACAAAGTTTTTCAGCTTCTAGTTTTGAGGAGTTCGCGCATAATTCACAAATGACGATGTTCAGTCATTACGGGCACATGTATGTGCCGGATTATTTGCACAAACAAAACCACAACATGCACGATTATAATCAAGCCGCATATCACGGAATGGGCCAGAATAACTACGAAATGTACAAAACTGGTACGGAAAATGTAAGCGCCGAAAGTAAAACCGATTCTCATTATACTACTTTAACAACAATGCCATATCAATCTAATAATAAGTTGCAAACTGTAGATAACGATCAGAACTGGTTCAGCCAGAATACGTTACTTAACCTGGATCAATCTGACCAAACCACTCAGGATGCTTCAGACACCAGATCTCAGGCTCCGGAGCCCCCCGCTGAAAGCAATACTACCGAGACTGCCGATAATTTTGGAGAACTTATAAAAAAAACAATGGTAGAATCTGTTACTGTGTAG
Protein
MDIKISEPVLEDIGSASQDESKLFEKNFRQTSSKTETFPVLRDEKSCDSDTHSEDLSSNDEQNNANGNSHFYESSDSKIDYAVKIDDNDTLSDIDDIKTDSASADSEDSALGSLPPDTAPNEREEEIQDRSEGSDSGFGSEAIVDANLPCFDLSLPCSKEDNNADNKKETGSIDNNDEELNNTTAKLSQPCSPLRSSLKRKHNNENSDEPQTKKRKEGIRFDNVTVFYFPRAQGFSCVPSQGGSTLGMEWEHSHIQKFTLAEHALEQRRLHRQILQQLKSERNSLKGDLLSSSEDSDTEEEASDISESELDLDNYYFLQPVPTRQRRALLRAAGVRKIEGYEKDECRDIRTSREFCGCACKGSCNPENCSCSLAGIKCQVDRLNFPCGCTRDGCGNTTGRIEFNPVRVRTHFIQTLMRIGLEKKNEENKEAAKKQWQHTTDIHNASTNGCLTNHLYERERCLRQEDGLLRDVNLTPRIEVESCVNSGNYNNVHCNNTQRNMQDGLSFNYSNHNCNPGSIHENGIISYESSNPHHQHHHADAYTSNIIQGKGPPYSATNPMGFDTTSNIHRFPCDMNYAYDQHTAETHHFKGLQSFSASSFEEFAHNSQMTMFSHYGHMYVPDYLHKQNHNMHDYNQAAYHGMGQNNYEMYKTGTENVSAESKTDSHYTTLTTMPYQSNNKLQTVDNDQNWFSQNTLLNLDQSDQTTQDASDTRSQAPEPPAESNTTETADNFGELIKKTMVESVTV

Summary

Pfam
PF16019   CSRNP_N
Interpro
IPR023260   Cys/Ser-rich_nuc_prot        + More
IPR031972   CSRNP_N       

Ontologies

GO

Topology

Length:
746
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00005
outside
1  -  746
 
 

Population Genetic Test Statistics

Pi
155.748332
Theta
191.046796
Tajima's D
-0.705381
CLR
4.200027
CSRT
0.193440327983601
Interpretation
Uncertain
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