Gene

KWMTBOMO02046

Pre Gene Modal

BGIBMGA002964

Annotation

PREDICTED:_probable_nuclear_hormone_receptor_HR38_[Amyelois_transitella]

Location

Bomo_Chr4(+):11031207-11046814      View in EpiBrowser

Full name

Probable nuclear hormone receptor HR38      

Alternative Name

Nuclear receptor subfamily 4 group A member 4

Transcription factor

NGFIB-like

Location in the cell

Nuclear   Reliability : 4.591

CDS

ATGCTACTGCTGCAAACACACAGCAACTACGGTTCGTCCTTCTCTGATCTGCTGTCACCACAATATCAAGAAGATTCCACGGAAATCTTAGAAGAAAACCTAGATCCATTCCCGGACGTAGAGTTTCACGCACCAATCGTTCCGGAATTTAAATCGCAACGGGACACCTCGTTCAGTGAAACATCATCACCGATACCTGGTCCTGCGTTGCCCAGTTTCGAGGAGACATATTCAGTTCGGTATCCGAAACACGAAATGGCAGAATTCGGTATCAAAATGGATGAAGATTGCTACAATGCTGCTAGACAACGGCGTTCGTCATTACCTGTGCAAAGATCTGAATCCAACAGCTCCAATGACAGTCCAAAATTGCACGGTACCAGAGTTCACTGTATGCAGCCTTCCACTCCGAATTCAGCATCAAGTTCTCCTGGAGTAGCACCTGCTGATAACACTGGACCACGTGCAGCACCATCTTCGCCCAGCCAGCTCTGTGCTGTTTGCGGAGATACAGCCGCTTGCCAACATTATGGTGTCAGAACTTGTGAAGGATGTAAAGGGTTCTTCAAGAGAACCGTTCAAAAAGGATCCAAGTATGTTTGCTTGGCTGAAAAATCTTGCCCTGTTGACAAAAGAAGACGGAATCGATGCCAATTTTGTCGGTTTCAAAAATGCCTCGCCGTGGGTATGGTGAAAGAAGTGGTTAGAACTGATTCTCTAAAAGGCAGGCGCGGTAGGCTGCCCTCAAAGCCTAAATGTCCACAAGAATCTCCACCAAGCCCACCCATCTCTCTGATAACAGCCCTTGTTCGAGCTCACGTTGATACTTCGCCGGACTTTGCTAATCTAGACTATTCTCAATATCGTGAGCCGAGTCCTCTTGAGCCACCGATGTCTGATCTTGAAGTTATTCATCAGTTTTACTCTCTTCTAACAACATCGATTGATATGATCAAACTTTTCGCTGAAAAAGTACCTGGATATGGTGATCTATGCCCCGAGGACCGAGAGCAACTATTTGCTTCTGCTCGTTTGGAACTGTTCGTTCTACGGTTGGCATATCGTACTCGACTTGAGGATACTAAGCTCACATTCTGCAATGGGCTAGTTCTCGATAAGCGACAGTGTCAGCGATCGTTCGGAGACTGGCTTCACGCAGTTCTGGATTTCAGTAATACGCTTCACTCTATGGATATCGACATTTCTACATTTGCCTGTCTTTGCGCACTGACTTTGATTACAGATAGACACGGCTTAAAAGAGCCGCATCGTGTGGAGCAGCTTCAAATGAAAATTATCGGATGCTTGCGAGCGCACATGCCGGGCGGAGGTGGATCGAGCAGCGGCGCGCCCCACTTTAGCCGCGTGCTGGGTGCTCTGCCCGAATTGCGCTCTTTGTCCGTGCAAGGCCTCCAACGCATATTCTACTTGAAGCTAGAAGACTTGGTCCCGGCACCACCTCTTATCGAAAACATGTTTCGTGCCAGCCTTCCCTTTTAG

Protein

MLLLQTHSNYGSSFSDLLSPQYQEDSTEILEENLDPFPDVEFHAPIVPEFKSQRDTSFSETSSPIPGPALPSFEETYSVRYPKHEMAEFGIKMDEDCYNAARQRRSSLPVQRSESNSSNDSPKLHGTRVHCMQPSTPNSASSSPGVAPADNTGPRAAPSSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKSCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKCPQESPPSPPISLITALVRAHVDTSPDFANLDYSQYREPSPLEPPMSDLEVIHQFYSLLTTSIDMIKLFAEKVPGYGDLCPEDREQLFASARLELFVLRLAYRTRLEDTKLTFCNGLVLDKRQCQRSFGDWLHAVLDFSNTLHSMDIDISTFACLCALTLITDRHGLKEPHRVEQLQMKIIGCLRAHMPGGGGSSSGAPHFSRVLGALPELRSLSVQGLQRIFYLKLEDLVPAPPLIENMFRASLPF

Subunit

Forms a heterodimer with USP.

Similarity

Belongs to the nuclear hormone receptor family.
Belongs to the nuclear hormone receptor family. NR4 subfamily.

Keywords

Complete proteome   DNA-binding   Metal-binding   Nucleus   Receptor   Reference proteome   Transcription   Transcription regulation   Zinc   Zinc-finger   3D-structure   Alternative splicing   Developmental protein  

Feature

chain  Probable nuclear hormone receptor HR38
splice variant  In isoform Short.

Uniprot

A0A2A4IT62   A0A2H1VY56   A0A212EHT7   H9J0C8   A0A345F6V5   A0A194PRJ3   + More
A0A194QNG4   A0A0L7LM84   P49870   A0A139WHA8   A0A2J7RFY8   E0VS41   A0A2J7RFY7   A0A2J7RFY9   A0A067QMU7   A0A1W4WQS6   A0A1B6FQU9   U4U9Y2   A0A291NL66   A0A1B6GB37   A0A1S5UZP4   A0A182M088   A0A1B0DPS6   A0A088ACX6   A0A1B0GIQ0   A0A2H8TTZ2   A0A2H8TFX6   A0A2A3E826   E2BR27   A0A2S2Q5A0   A0A2S2NJG1   A0A087ZMX8   A0A182P8L8   A0A195DA12   A0A182Y3B6   A0A158ND13   A0A195B8Z4   A0A0M8ZST5   A0A182K8W3   A0A182QM62   A0A195F7H2   F4X0K8   A0A182W6K3   A0A0J7L2F3   A0A182NTV2   A0A151WYB1   N6U9D7   J9JU89   E2A050   A0A0L7R6E8   A0A195D0F6   A0A182RMA1   A0A1I8ND61   A0A3L8DHV4   A0A026WH56   A0A1I8NXN5   A0A1A9ZEV9   A0A1A9VI64   A0A1A9WLX4   A0A1A9YHJ6   A0A1B0GAU1   B4JAJ3   B4IFE8   B3MK14   P49869-2   B4Q3G5   B4KIZ9   B4MWC4   B4LV94   A0A1W4UVX3   E1JHM7   Q29LW4   A0A3B0JB99   B4P6L1   B3NLY9   T1JEI3   A0A1W4UID4   P49869   A0A0J9R514   A0A154P5L7   A0A0M3QUA3  

Pubmed

22118469    19121390    26354079    26227816    7644522    18362917    + More
19820115    20566863    24845553    23537049    20798317    25244985    21347285    21719571    25315136    30249741    24508170    17994087    9704500    9649534    10731132    12537572    7479849    12537568    12537573    12537574    16110336    17569856    17569867    15632085    17550304    22936249   

EMBL

NWSH01008707    PCG62444.1    ODYU01005169    SOQ45769.1    AGBW02014799    OWR41045.1    + More
BABH01010554    MF402845    AXG24154.1    KQ459601    KPI93755.1    KQ461196    KPJ06515.1    JTDY01000586    KOB76557.1    X89247    KQ971343    KYB27378.1    NEVH01004408    PNF39742.1    DS235742    EEB16197.1    PNF39743.1    PNF39741.1    KK853237    KDR09534.1    GECZ01017250    JAS52519.1    KB632152    ERL89163.1    KX947291    ATI99810.1    GECZ01010143    JAS59626.1    KX373867    AQN67826.1    AXCM01010206    AJVK01008219    AJVK01008220    AJVK01008221    AJVK01008222    AJWK01015243    AJWK01015244    AJWK01015245    AJWK01015246    GFXV01005901    MBW17706.1    GFXV01001208    MBW13013.1    KZ288335    PBC27865.1    GL449898    EFN81833.1    GGMS01003703    MBY72906.1    GGMR01004702    MBY17321.1    KQ981135    KYN09244.1    ADTU01012160    ADTU01012161    KQ976558    KYM80669.1    KQ435896    KOX69256.1    AXCN02000807    KQ981744    KYN36388.1    GL888498    EGI60000.1    LBMM01001262    KMQ96624.1    KQ982650    KYQ52863.1    APGK01043858    APGK01043859    KB741018    ENN75207.1    ABLF02033596    GL435551    EFN73183.1    KQ414646    KOC66394.1    KQ977012    KYN06398.1    QOIP01000007    RLU19997.1    KK107213    EZA55288.1    CCAG010020048    CH916368    EDW02779.1    CH480833    EDW46370.1    CH902620    EDV31432.2    X89246    Y15606    AJ002073    AE014134    U36762    CM000361    EDX05646.1    CH933807    EDW13512.2    CH963857    EDW75994.1    CH940649    EDW64354.2    ACZ94310.1    CH379060    EAL33931.3    OUUW01000004    SPP79624.1    CM000158    EDW90963.1    CH954179    EDV54525.2    JH432122    CM002910    KMY91193.1    KQ434822    KZC07141.1    CP012523    ALC40313.1   

Proteomes

UP000218220    UP000007151    UP000005204    UP000053268    UP000053240    UP000037510    + More
UP000007266    UP000235965    UP000009046    UP000027135    UP000192223    UP000030742    UP000075883    UP000092462    UP000005203    UP000092461    UP000242457    UP000008237    UP000075885    UP000078492    UP000076408    UP000005205    UP000078540    UP000053105    UP000075881    UP000075886    UP000078541    UP000007755    UP000075920    UP000036403    UP000075884    UP000075809    UP000019118    UP000007819    UP000000311    UP000053825    UP000078542    UP000075900    UP000095301    UP000279307    UP000053097    UP000095300    UP000092445    UP000078200    UP000091820    UP000092443    UP000092444    UP000001070    UP000001292    UP000007801    UP000000803    UP000000304    UP000009192    UP000007798    UP000008792    UP000192221    UP000001819    UP000268350    UP000002282    UP000008711    UP000076502    UP000092553   

PRIDE

H9J0C8    P49870    P49869   

Pfam

PF00104   Hormone_recep        + More
PF00105   zf-C4

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR003070   Nuc_orph_rcpt       
IPR035500   NHR-like_dom_sf       
IPR001628   Znf_hrmn_rcpt       
IPR001723   Nuclear_hrmn_rcpt       
IPR000536   Nucl_hrmn_rcpt_lig-bd       
IPR003078   Retinoic_acid_rcpt       
IPR003073   NURR_rcpt       
IPR003072   NOR1_rcpt       

SUPFAM

SSF48508   SSF48508       

Gene 3D

1.10.565.10     3.30.50.10    

ProteinModelPortal

A0A2A4IT62   A0A2H1VY56   A0A212EHT7   H9J0C8   A0A345F6V5   A0A194PRJ3   + More
A0A194QNG4   A0A0L7LM84   P49870   A0A139WHA8   A0A2J7RFY8   E0VS41   A0A2J7RFY7   A0A2J7RFY9   A0A067QMU7   A0A1W4WQS6   A0A1B6FQU9   U4U9Y2   A0A291NL66   A0A1B6GB37   A0A1S5UZP4   A0A182M088   A0A1B0DPS6   A0A088ACX6   A0A1B0GIQ0   A0A2H8TTZ2   A0A2H8TFX6   A0A2A3E826   E2BR27   A0A2S2Q5A0   A0A2S2NJG1   A0A087ZMX8   A0A182P8L8   A0A195DA12   A0A182Y3B6   A0A158ND13   A0A195B8Z4   A0A0M8ZST5   A0A182K8W3   A0A182QM62   A0A195F7H2   F4X0K8   A0A182W6K3   A0A0J7L2F3   A0A182NTV2   A0A151WYB1   N6U9D7   J9JU89   E2A050   A0A0L7R6E8   A0A195D0F6   A0A182RMA1   A0A1I8ND61   A0A3L8DHV4   A0A026WH56   A0A1I8NXN5   A0A1A9ZEV9   A0A1A9VI64   A0A1A9WLX4   A0A1A9YHJ6   A0A1B0GAU1   B4JAJ3   B4IFE8   B3MK14   P49869-2   B4Q3G5   B4KIZ9   B4MWC4   B4LV94   A0A1W4UVX3   E1JHM7   Q29LW4   A0A3B0JB99   B4P6L1   B3NLY9   T1JEI3   A0A1W4UID4   P49869   A0A0J9R514   A0A154P5L7   A0A0M3QUA3  

PDB

1PDU     E-value=1.93554e-87,     Score=823

KEGG

693064    K08558 nuclear receptor subfamily 4 group A member 2 | (RefSeq) Bhr38, Hr38; nuclear hormone recepto

GO

GO:0043565   GO:0003707   GO:0004879   GO:0008270   GO:0005634   GO:0000977   GO:0005667   GO:0071376   GO:0000978   GO:0048384   GO:0035259   GO:0003700   GO:0003677   GO:0046872   GO:0001047   GO:0005102   GO:0048082   GO:0042335   GO:0005737   GO:0046982   GO:0045944   GO:0006355   GO:0043401   GO:0003708  

Subcellular location

Nucleus  

Length:

499

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00917999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00126

outside

1  -  499

 

 

Pi

210.925718

Theta

168.876276

Tajima's D

0.606952

CLR

0.432374

CSRT

0.549572521373931

Interpretation

Uncertain