Gene

KWMTBOMO02033

Pre Gene Modal

BGIBMGA003208

Annotation

PREDICTED:_LIM/homeobox_protein_Lhx3_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(-):10663393-10670350      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 2.344

CDS

ATGATGTACCCCGGTACCGAGGATCCAACGCTGGAAGACATGCGCGTACCACCGATTCAACTCGAGCACCTGCCTGAGGTGTTCCTATCCAGTATTCCAAAATGTGGCGGTTGTCACGAGATGATAGTGGATCGGTACGTGTTAAAGGTGTCGGACCGGACGTGGCACGCCGGCTGCTTGCGCTGTGTCGAATGCCGCGCGTTGTTAACTGGAAAGTGCTTTGCGAGGAACAATCAGTTGTACTGCACCGAGGACTTCTTCAAGCGTTTCGGAACCAAATGCAGTGGTTGCGGGCAGGGCATACCGCCGACTCAGGTCGTACGTCGCGCGCAATCTCACGTCTACCACCTGAGGTGTTTCGCCTGTGCCGCCTGCGCACGTACCCTGAACACAGGAGACGAGTTCTACCTTATGGAGGACGGAAAGCTTGTCTGTAAACCGGATTACGAAGCTGCCAGAGCTAAAGATATACCAAACGCAGGTGGGGATGGCTCGCTCGACGGTGACGCGGCAAGCAAGAGGCCCAGGACTACGATTACGGCCAAACAATTGGAGACTCTGAAAAGTGCATACAGCAGTAGTCCGAAACCAGCGAGACACGTGCGGGAGCAGCTCGCACACGACACGGGTCTGGACATGCGGGTCGTACAAGTTTGGTTCCAGAACAGAATTAAGACTGGTATGCAAGTAACTAATGAAACACAATTGTATGTACAAAGATAA

Protein

MMYPGTEDPTLEDMRVPPIQLEHLPEVFLSSIPKCGGCHEMIVDRYVLKVSDRTWHAGCLRCVECRALLTGKCFARNNQLYCTEDFFKRFGTKCSGCGQGIPPTQVVRRAQSHVYHLRCFACAACARTLNTGDEFYLMEDGKLVCKPDYEAARAKDIPNAGGDGSLDGDAASKRPRTTITAKQLETLKSAYSSSPKPARHVREQLAHDTGLDMRVVQVWFQNRIKTGMQVTNETQLYVQR

Uniprot

A0A2H1W8Y5   A0A212ESN3   A0A194R997   A0A194PRK3   A0A2A4JYA2   H9J121   + More
A0A336KDS5   Q7PW54   A0A182KUR4   A0A182K9A4   A0A182QY65   A0A182LS98   A0A182NEV2   A0A182F5I0   A0A182IS42   A0A182WGX9   A0A182TVX9   A0A1S4H041   A0A182UYK6   A0A182X2X7   A0A182I4X7   A0A182YFF9   B0X2D6   W5JD68   A0A139WHA2   A0A182GUD1   Q16S23   Q173L2   A0A182PDE6   U5EUV8   A0A139WGV6   A0A1Y1KP73   A0A1J1I1N0   A0A1I8PZ64   A0A1I8M393   B4N183   B4KKH0   B4JPB5   A0A0L7LJZ4   B4Q9G3   O96686   Q9VJ02   A0A1W4WA71   B3MNQ0   A0A3B0KK56   A0A1A9W041   A0A1A9XGU2   A0A1B0A521   W8BV70   A0A1I8PZ31   A0A0P9BN43   A0A1W4W9Q4   A0A336M6X5   A0A0K8VGS2   D6WLS0   E0VJP9   A0A0T6B4C6   A0A182S9V6   A0A084VMD5   A0A067RS96   A0A2S2NXZ9   J9JYD0   A0A2H8TGP1   A0A1A9V9K4   A0A1B0FNP8   B4GXD2   A0A1D2N895   B4GXD4   E2BTV1   A0A151X919   Q29K29   M9NCY1   A0A0C9QEC9   T1J797   A0A3Q0IZM3   A0A0M9A229   A0A195BN66   A0A195EX03   F4X3D8   A0A195DG31   A0A158NRM9   A0A3B0KBJ4   A0A0L0BVA7   B4M929   A0A3L8D9T6   D0QWC3   A0A2S2Q8L9   T1I0E6   A0A088A3X7   W8CAG8   A0A195CJ82   A0A1W4W8U8   Q9VJ00   A0A034WNZ2   A0A2A3EHX9   B4I5R3   B4PAG8   M9PD53   A0A0J9TR83   B3NM94  

Pubmed

22118469    26354079    19121390    12364791    20966253    25244985    + More
20920257    23761445    18362917    19820115    26483478    17510324    28004739    25315136    17994087    26227816    9892357    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24495485    20566863    24438588    24845553    27289101    20798317    15632085    21719571    21347285    26108605    30249741    19859648    26109357    26109356    25348373    17550304    22936249   

EMBL

ODYU01007084    SOQ49541.1    AGBW02012749    OWR44505.1    KQ460597    KPJ13835.1    + More
KQ459601    KPI93765.1    NWSH01000407    PCG76614.1    BABH01010593    BABH01010594    UFQS01000222    UFQT01000222    SSX01565.1    SSX21945.1    AAAB01008984    EAA14726.3    AXCN02000840    AXCM01002871    APCN01003737    DS232286    EDS39159.1    ADMH02001866    ETN60764.1    KQ971343    KYB27231.1    JXUM01088873    KQ563730    KXJ73420.1    CH477689    EAT37245.1    CH477422    EAT41217.1    GANO01002157    JAB57714.1    KYB27230.1    GEZM01080936    JAV61980.1    CVRI01000037    CRK93492.1    CH963920    EDW78023.2    CH933807    EDW11620.1    CH916372    EDV98745.1    JTDY01000830    KOB75745.1    CM000361    EDX05470.1    AF109306    AAD02889.1    AE014134    AAF53756.1    CH902620    EDV31137.1    OUUW01000010    SPP85531.1    GAMC01001320    JAC05236.1    KPU73232.1    UFQT01000634    SSX25965.1    GDHF01014252    JAI38062.1    EFA04155.2    DS235226    EEB13605.1    LJIG01009861    KRT82233.1    ATLV01014586    KE524975    KFB39129.1    KK852451    KDR23680.1    GGMR01009441    MBY22060.1    ABLF02018663    GFXV01001481    MBW13286.1    CCAG010015908    CH479195    EDW27243.1    LJIJ01000149    ODN01489.1    EDW27245.1    GL450531    EFN80850.1    KQ982409    KYQ56778.1    CH379061    EAL33349.3    AFH03761.1    GBYB01001659    JAG71426.1    JH431916    KQ435759    KOX75700.1    KQ976439    KYM86663.1    KQ981931    KYN32810.1    GL888613    EGI59029.1    KQ980886    KYN11801.1    ADTU01024183    SPP85530.1    JRES01001289    KNC23913.1    CH940654    EDW57705.2    QOIP01000011    RLU17096.1    FJ821025    ACN94618.1    GGMS01004876    MBY74079.1    ACPB03005864    GAMC01001319    JAC05237.1    KQ977649    KYN00785.1    BT029915    AAF53758.2    ABM92789.1    AFH03759.1    AFH03760.1    AFH03762.1    GAKP01003042    JAC55910.1    KZ288239    PBC31308.1    CH480822    EDW55719.1    CM000158    EDW90376.2    AGB93094.1    CM002910    KMY90940.1    CH954179    EDV54694.2   

Proteomes

UP000007151    UP000053240    UP000053268    UP000218220    UP000005204    UP000007062    + More
UP000075882    UP000075881    UP000075886    UP000075883    UP000075884    UP000069272    UP000075880    UP000075920    UP000075902    UP000075903    UP000076407    UP000075840    UP000076408    UP000002320    UP000000673    UP000007266    UP000069940    UP000249989    UP000008820    UP000075885    UP000183832    UP000095300    UP000095301    UP000007798    UP000009192    UP000001070    UP000037510    UP000000304    UP000000803    UP000192221    UP000007801    UP000268350    UP000091820    UP000092443    UP000092445    UP000009046    UP000075901    UP000030765    UP000027135    UP000007819    UP000078200    UP000092444    UP000008744    UP000094527    UP000008237    UP000075809    UP000001819    UP000079169    UP000053105    UP000078540    UP000078541    UP000007755    UP000078492    UP000005205    UP000037069    UP000008792    UP000279307    UP000015103    UP000005203    UP000078542    UP000242457    UP000001292    UP000002282    UP000008711   

PRIDE

H9J121    O96686    Q9VJ02    Q9VJ00   

Pfam

PF00046   Homeodomain        + More
PF00412   LIM

Interpro

IPR009057   Homeobox-like_sf        + More
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
IPR001781   Znf_LIM       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A2H1W8Y5   A0A212ESN3   A0A194R997   A0A194PRK3   A0A2A4JYA2   H9J121   + More
A0A336KDS5   Q7PW54   A0A182KUR4   A0A182K9A4   A0A182QY65   A0A182LS98   A0A182NEV2   A0A182F5I0   A0A182IS42   A0A182WGX9   A0A182TVX9   A0A1S4H041   A0A182UYK6   A0A182X2X7   A0A182I4X7   A0A182YFF9   B0X2D6   W5JD68   A0A139WHA2   A0A182GUD1   Q16S23   Q173L2   A0A182PDE6   U5EUV8   A0A139WGV6   A0A1Y1KP73   A0A1J1I1N0   A0A1I8PZ64   A0A1I8M393   B4N183   B4KKH0   B4JPB5   A0A0L7LJZ4   B4Q9G3   O96686   Q9VJ02   A0A1W4WA71   B3MNQ0   A0A3B0KK56   A0A1A9W041   A0A1A9XGU2   A0A1B0A521   W8BV70   A0A1I8PZ31   A0A0P9BN43   A0A1W4W9Q4   A0A336M6X5   A0A0K8VGS2   D6WLS0   E0VJP9   A0A0T6B4C6   A0A182S9V6   A0A084VMD5   A0A067RS96   A0A2S2NXZ9   J9JYD0   A0A2H8TGP1   A0A1A9V9K4   A0A1B0FNP8   B4GXD2   A0A1D2N895   B4GXD4   E2BTV1   A0A151X919   Q29K29   M9NCY1   A0A0C9QEC9   T1J797   A0A3Q0IZM3   A0A0M9A229   A0A195BN66   A0A195EX03   F4X3D8   A0A195DG31   A0A158NRM9   A0A3B0KBJ4   A0A0L0BVA7   B4M929   A0A3L8D9T6   D0QWC3   A0A2S2Q8L9   T1I0E6   A0A088A3X7   W8CAG8   A0A195CJ82   A0A1W4W8U8   Q9VJ00   A0A034WNZ2   A0A2A3EHX9   B4I5R3   B4PAG8   M9PD53   A0A0J9TR83   B3NM94  

PDB

3MMK     E-value=1.52107e-45,     Score=458

KEGG

101744906    K09374 LIM homeobox protein 3/4 | (RefSeq) LIM/homeobox protein Lhx3

GO

GO:0006355   GO:0043565   GO:0046872   GO:0005634   GO:0003677   GO:0000981   GO:0000977   GO:0045944   GO:0030182   GO:0010628   GO:0008045   GO:0007399   GO:0016021   GO:0016740   GO:0008270   GO:0042176   GO:0005515   GO:0007155   GO:0016876   GO:0043039   GO:0004651  

Subcellular location

Nucleus  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00321

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.04104

outside

1  -  240

 

 

Pi

297.887446

Theta

170.498808

Tajima's D

1.79453

CLR

0.070158

CSRT

0.846957652117394

Interpretation

Uncertain