Silkworm Genome Informatics Database

Gene

KWMTBOMO01858

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(-):6580319-6586401 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 3.405

CDS

ATGGAGTTTTCTCCAACCAACACACTGCTCGCGGAATTCTTAAGCGAGAAATACCCGGCCCTCGAATCAGAATTTTTAGCTTACAAAGCTAAGCGCGCCGTGAACTGTTCTGCCGTGCCCGCCGCGCCCGCCGTTTCCGCCACGCCTGCCGTTCCCGCGTCCCCTGCAAGCGCGCGCAAAACTCCCGCGCCGTACACCGCAGCCTCCGTCGCGCCCAGCACACCCGTGTCCCCCATACTGTCGCGAAAAACTCCCGCGTCTACCGCGGCAGCTTCCGTTCTACCTCAGCGATCGTCTGCGGCCTCCGTCGCGTCCGCCGCTCCCGCGCCTTCCTCCTCGTCCTCCGACTCTGACTCGGATATGGAGGTTGACCTCGTTCCCGCCTCATTAACAGATGGATTCACTCTCGTGCAAAAGGGTAAGAAGCGCGCCGCGGAGTCCCGAGCTTCCGCGGCCGCTAAAATAAGCAAAGCCGCGAACGCGTCGCGCCCCCGCCCTCCGACCCCCGTCGCTCCCTGTCCCCGTGCCACGCCGTCGCCGCGCCCGGTGGCACAAACGAGAAATCAAGCCCCTCCTCCGTTGATTCTTCAAGAGAAGGCTGCTTGGGACCGTATCTCCCTGGCCCTTAAGGCCAAAAACATAAATTTTGTCAGTGCCCGTAACCTCGCGAACGGGATACAAATAAAAGTAGCAACACCCGACGACCATAGGGCACTCTCAAGCTACCTCCGAAAGGAGCGTATAAGTTATCATACGTATACGCTCCAGGAGGAGCGTGAGCTCCGTGCAGTCATACGTGGCATCCCCAAGGAGTTAGATGCCGAGCTCGTAAAGGCCGACCTACTCGAACAAGGCCTACCCGTAAACTCCGTGCACCGCATGCACACAGGACGCGGGAGGGAGCCATACAATATGGTTCTCGTCGCCCTCCAGTCTACCCCCGAGGGTAAGAAAATCTTTAACGTCCGAACTGTCTGTAGGCTTTCCGGAATCACCGTGGAAACCCCTCATAAAAAAGGCACTCCGAGCCAGTGCCACAATTGTCAGTTGTACGGGCATTCTTCCCGTAATTGTCACGCGCGCCCTCGATGCGTCAAGTGTTTGGACGATCACGCCACGACTCTTTGCACTCGCGATCAAAAAACCGCGACGGAACCACCTAGCTGCGTCCTGTGCCGAACACAGGGTCACCCCGCGAATTACCGTGGATGCCCCCGAGCCCCTAAAATAAATCGCCGCGTTGCGCGTCAAAACCGCCTCCGAGCTTCCGGCCCTGACATCAAAGCCACGGCACCCTCTGTGCCGAAGGCTAAGCCTGCCTTCGTGCCGGCGCCGGTGCCCAGCGGCTCGGCCTGGGCTAAACCGTTGCCGTACACGAACACGGCTGTAGCTCCCTCCCCCGCGGTTCGTCCCGTCCCCGCGATACGTCCCTCCCCCGTGATTCGTTCCTCCCCCGCGACCAGCACTCCGACCGCGTCCGACAATCTCGCTCTAGCGATCGACTTTTTTCAGTCGATCAACTTTGAGCGTGTTAATGCTTTGGGTGACGCCATTCGCGCCGCCTCCACTGCACAACACTTCATCGCCGTTGTGCAAGAATACGCTGACGAGACCCTGCTTAAGCCCGCGCGCCGCGACCCTAAAATCGCGAACTATAACATGGTTAGGAACGACAGGCTCACTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCACTCGACCCCCCCGCGCTTTCTAACATCGAAGCATCAGTATGCCGAATCTCACTGACTGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGAAGCTCTGTCATTCTGGTGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACACCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCAATCGAAGTAGTTTCAGAGTTAGATTCAGACCATCGTCCCGTCGTTATGAAGCTCGGTCGCCCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCTTGGCTGAATCTGATCCACCATCGCTCCCGTTGAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACACCTCGATCCGCGCCTACGATCGGTATCCTACCATGGATAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAAGACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCCCAGGCCGACTCGCGGCATTCGATGATGATGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTACCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGATAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTTGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTGAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGATGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCTAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGATGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGTGACTCCAATTGCATTTGCCTGAAAAAGATGGATACTACTCCGGAAAAAGCCGCTCAAGTCGTCGCTCTAATTGAAGCGGGCCAGAACCAGAGTGCTGTAGCTCGACAACTGAATATCAGCCGATATTCACTTCGTCGTGTGTACCAGCGCTATCCGGAGACTGGTGGCTTTGAAAGGCGACGAGGATCTGGTCGAGCAAGAGCTACAACACAGCGCGACAACAGATTTCTTGTAACGACAGCGTTGCGAAATCGTCGTTTGACTGCCGTTGAACTTGCACAGCAGCTTCAACAGGTGCGTGAAGTGGTAGTCAGCAGGTGGACAGTCAGAAGGAGACTTGCCGAAGGTGGTTTGACTGCGCATAGGCCAGCAAATGGCCCTAAATTGACGCCAGCTCACCGCCGGGCTCGTTTTCGATTTGCACAAGAACACGTCAACTGGACAGCCGACCAGTGGAAAGCAGTCCTGTTCTCAGACGAGTCCAGAATGTGTCTTCATGATAATGATGGACGTGGAAGGGTCTACAGAAGGCGCTCAGAGCGATTTTCCCAATGTTGCATCACAGAACGTGTAGCATACGGCGGTGGTTCGTGTATGTTCTGGGGAGGTATCTCACTCGAACGAAAAACAGAGCTTGTCTTCATCGTTGGGGCCAATATTAGGCGACAAACAAGAGGTCTAACATCTCAACGATACATAGAGGAAGTTCTACAAGAACATGTCGTACCATTTGGCCGTTTAATTGGAAGTAACTTCCTTTTTATGCATGACAATGCAAGACCTCATACCGCTGCGATAGTGAGACAATACTTACAAGAAGTAAATGTACCCGTGATGGAGTGGCCAGCTCGGAGCCCGGACCTTAATCCGATTGAACACTTGTGGGACGAATTAAAAAGAAAAATTAGAGGTCGAAATAGTGCTCCAGCTAATCTCCAGGAGCTACAAAATGCGCTCAAAGAGGAATGGGACGCCATGCCACAAGACTTTATCAGAAACTTGATAGAGTCGATGGGGAATCGGTGTGAAGCTGTAATTCGCGAAAGAGGGGGCAATACTTGTTACTAA

Protein

MEFSPTNTLLAEFLSEKYPALESEFLAYKAKRAVNCSAVPAAPAVSATPAVPASPASARKTPAPYTAASVAPSTPVSPILSRKTPASTAAASVLPQRSSAASVASAAPAPSSSSSDSDSDMEVDLVPASLTDGFTLVQKGKKRAAESRASAAAKISKAANASRPRPPTPVAPCPRATPSPRPVAQTRNQAPPPLILQEKAAWDRISLALKAKNINFVSARNLANGIQIKVATPDDHRALSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKATAPSVPKAKPAFVPAPVPSGSAWAKPLPYTNTAVAPSPAVRPVPAIRPSPVIRSSPATSTPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADETLLKPARRDPKIANYNMVRNDRLTARGGGTVIYYRRALHCVPLDPPALSNIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILVGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRPPDSVPVTRTVVDWHTLGISLAESDPPSLPLSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNTSIRAYDRYPTMDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPSQRSYYRLARTLKSDTVVTMPPLVGPPGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPDKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLLNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKMTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCSDSNCICLKKMDTTPEKAAQVVALIEAGQNQSAVARQLNISRYSLRRVYQRYPETGGFERRRGSGRARATTQRDNRFLVTTALRNRRLTAVELAQQLQQVREVVVSRWTVRRRLAEGGLTAHRPANGPKLTPAHRRARFRFAQEHVNWTADQWKAVLFSDESRMCLHDNDGRGRVYRRRSERFSQCCITERVAYGGGSCMFWGGISLERKTELVFIVGANIRRQTRGLTSQRYIEEVLQEHVVPFGRLIGSNFLFMHDNARPHTAAIVRQYLQEVNVPVMEWPARSPDLNPIEHLWDELKRKIRGRNSAPANLQELQNALKEEWDAMPQDFIRNLIESMGNRCEAVIRERGGNTCY

Uniprot

NA

ProteinModelPortal

NA

PDB

5CR4 E-value=7.62114e-28, Score=314

KEGG

105841502 no KO assigned | (RefSeq) transposable element Tcb1 transposase

GO

GO:0003677 GO:0006313 GO:0015074 GO:0008270 GO:0043565 GO:0043401 GO:0003707 GO:0004651 GO:0005634

Length:

1696

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.39175

Exp number, first 60 AAs:

0.00628

Total prob of N-in:

0.00030

outside

1 - 1696

Pi

0.123405

Theta

0.627894

Tajima's D

0

CLR

1.595384

CSRT

0.466726663666817

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree