SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01854
Annotation
gag-like_protein_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.004 Nuclear   Reliability : 1.997
 

Sequence

CDS
ATGGAGTTTTCTCCAACCAACACACTGCTCGCGGAATTCTTAAGCGAGAAATACCCGGCCCTCGAATCAGAATTTTTAGCTTACAAAGCTAAACGCGCCGTGAACTGTTCTGCCGTGCCCGCCGCGCCCGCCGTTTCCGCCACGCCTGCCGTTCCCGCGTCCCCTGCAAGCGCGCGCAAAACTCCCGCGCCGTACACCGCAGCCTCCGTCGCGCCCAGCACACCCGTGTCCCCCATACTGTCGCGAAAAACTGCCGCGTCTACCGCGGCAGCTTCCGTTCTACCTCAGCGATCGTCTGCGGCCTCCGTCGCGTCCGCCGCTCCCGCGCCTTCCTCCTCGTCCTCCGACTCTGACTCGGATATGGAGGTTGACCTCGTTCCCGCCTCATTAACAGATGGATTCACTCTCGTGCAAAAGGGTAAGAAGCGCGCCGCGGAGTCCCGAGCTTCCGCGGCCGCTAAAATAAGCAAAGCCGCGAACGCGTCTCGCCCCCGCCCTCCGACCCCCGTCGCTCCCTGTCCTCGTGCCACGCCGTCGCCGCGCCCGGTGGCACAAACGAGAAATCAGGCCCCTCCTCCGTTGATTCTTCAAGAGAAGGCTGCTTGGGACCGTATCTCCCTGGCCCTTAAGGCCAAAAACATAAATTTTGTCAGTGCCCGTAACCTCGCGAACGGGATACAGATAAAAGTAGCAACACCCGACGACCATAGGGCCCTCTCAAGCTACCTCCGAAAGGAGCGTATAAGTTATCATACGTATACGCTCCAGGAGGAGCGTGAGCTCCGTGCAGTCATACGTGGCATCCCCAAGGAGTTAGATGCCGAGCTCGTAAAGGCCGACCTACTCGAACAAGGCCTACCCGTAAACTCCGTGCACCGCATGCACACAGGACGCGGGAGGGAGCCATACAATATGGTTCTCGTCGCCCTCCAGTCTACCCCCGAGGGTAAGAAAATCTTTAACGTCCGAACTGTCTGTAGGCTTTCCGGAATCACCGTGGAAACCCCTCATAAAAAAGGCACTCCGAGCCAGTGCCACAATTGTCAGTTGTACGGGCATTCTTCCCGTAATTGTCACGCGCGCCCTCGATGCGTCAAGTGTTTGGACGATCACGCCACGACTCTTTGCACTCGCGATCAAAAAACCGCGACGGAACCACCTAGCTGCGTCCTGTGCCGAACACAGGGTCACCCCGCGAATTACCGTGGATGCCCCCGAGCCCCTAAAATAAATCGCCGCGTCGCGCGTCAAAACCGCCTCCGAGCTTCCGGCCCTGGCATCAAAGCCACGGCACCCTCTGTGCCGAAGGCTAAGCCTGCCTTCGTGCCGGCGCCGGTGCCCAGCGGCTCGGCCTGGGCTAAACCGTTGCCGTACACGAACACGGCTGTAGCTCCCTCCCCCGCGATTCGTCCCGTCCCCGCGATACGTCCCTCCCCCGTGATTCGTTCCTCCCCCGCGACCAGCACTCCGACCGCGTCCGACAATCTCGCTCTAGCGATCGACTTTTTTCAGTCGATCAACTTTGAGCGTGTTAATGCTTTGGGTGACGCCATTCGCGCCGCCTCCACTGCACAACACTTCATCGCCGTTGTGCAAGAATACGCTGACGTATACGCGTCGTTAAATACGTACGTCCTCCCCTCGCTCCGCCGGTAA
Protein
MEFSPTNTLLAEFLSEKYPALESEFLAYKAKRAVNCSAVPAAPAVSATPAVPASPASARKTPAPYTAASVAPSTPVSPILSRKTAASTAAASVLPQRSSAASVASAAPAPSSSSSDSDSDMEVDLVPASLTDGFTLVQKGKKRAAESRASAAAKISKAANASRPRPPTPVAPCPRATPSPRPVAQTRNQAPPPLILQEKAAWDRISLALKAKNINFVSARNLANGIQIKVATPDDHRALSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASGPGIKATAPSVPKAKPAFVPAPVPSGSAWAKPLPYTNTAVAPSPAIRPVPAIRPSPVIRSSPATSTPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR

Summary

Pfam
PF07530   PRE_C2HC
Interpro
IPR006579   Pre_C2HC_dom       
ProteinModelPortal

Ontologies

GO

Topology

Length:
551
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02053
Exp number, first 60 AAs:
0.0063
Total prob of N-in:
0.00064
outside
1  -  551
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
2.856973
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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