Gene

KWMTBOMO01850

Pre Gene Modal

BGIBMGA006182

Annotation

PREDICTED:_transcription_factor_glial_cells_missing_2-like_[Bombyx_mori]

Location

Bomo_Chr4(+):6381003-6388042      View in EpiBrowser

Transcription factor

GCM

Location in the cell

Mitochondrial   Reliability : 2.329

CDS

ATGGTGATCCTCACCAGTCGCACTGATATGTCCGAGGGTGCAGCGACTGCCGACTGGGATATTAACGACGCTGTAGTGCCGCGAGTCACCAGCTTCGACGCGTTCGGCGAGTGGTGCGACGGTCACGTGCGAAGAGTCTACCCTCCGGCCTGTGAGGAGGCCCGCAGACACGCCTCGGGCTGGGCCATGAGGAACACGAACAATCACAATGTACACATCCTAAAGAAAAGCTGCCTAGGCGTATTGGTGTGCTCCGTTAGATGCAGACTACCAGATGGCTCCAGGGTCCATTTGCGGCCCGCCATCTGTGATAAAGCACGGAAGAAACAGCAAGGAAAACCATGTCCAAATAGACTATGTAACGGAGGACGCCTCGAAGTTCAACCTTGCCGAGGTCATTGCGGGTACCCAGTCACGCATTTTTGGCGCCATACAGAACACGCTATATTCTTTCAAGCAAAGGGTTCCCATGATCATCCAAGACCCGAAGCAAAAGGAGCCAGTGAAGTGCGACGGTCTTTAGGGGCCGGTAGAAGAGTAAGAGGTATAGCATTACTGCTGGCGAGAGAAGCGGCGATTGCAGATAAAATGATGACTGTAAAACCAGAAAAGCAGATGTCTCAGAAACTAGTTAATCCTCATTCCCAGCCACCGCCGCTTATTCCGGATAGTCAAAGAGTTCAACTAACATGCACATGCGGTCCTTTTGAATGTTCCTGTCGCTGGCGCGCGGACCCTTCGTCAGAGCCTTGCATGGCTTCAACGTGGCCACTCTCTGAAGCGCAGACCTACACGACCTATGTCCCTCCCGTGCCGCCAGCGCCGTCACTGTCAGTCCAACAACATTACGACCCGACCGCGTTGCCGGCTGACGACATCTTCCACCCAGAGGAAATATTTCAACTGGACCAACCAATAAGACTAGACTATCCCATGGAAGAAAGCACTCTAGAATCTCCGCCGACGTTCGCGGATCTAAACAGTGAAAACTCCAGGCCCGAGGATCCGTATTGGTTGGACTGGCAACATCCCACCGGATCCGAGTCCAGCGAAACCCCGTCCCCGGAACTGTTCGGCGGCTGCTATCAACAGAACGAAGGCTACTGCGACCAGCAGGCTTACGTACAGCAGCCGTATTACCCGGAAGAGGCTCAATACTATCCAACTGAGAGTACCAGGAACTCTCCAATAATGGACATACAGGACCAACGGTTCTATCGGTACGGGCAGGATTGTGTTCAGACTTTGGAAACGCAAGCGTGGAACTATTCGGACTGCGCCTTCTCCTCCAATGACGTCACGGAATGTAAGCAATACTTCGACGTTCAACACCAACAGAACATGAACGCTTTCAACGGTCTTTTATAA

Protein

MVILTSRTDMSEGAATADWDINDAVVPRVTSFDAFGEWCDGHVRRVYPPACEEARRHASGWAMRNTNNHNVHILKKSCLGVLVCSVRCRLPDGSRVHLRPAICDKARKKQQGKPCPNRLCNGGRLEVQPCRGHCGYPVTHFWRHTEHAIFFQAKGSHDHPRPEAKGASEVRRSLGAGRRVRGIALLLAREAAIADKMMTVKPEKQMSQKLVNPHSQPPPLIPDSQRVQLTCTCGPFECSCRWRADPSSEPCMASTWPLSEAQTYTTYVPPVPPAPSLSVQQHYDPTALPADDIFHPEEIFQLDQPIRLDYPMEESTLESPPTFADLNSENSRPEDPYWLDWQHPTGSESSETPSPELFGGCYQQNEGYCDQQAYVQQPYYPEEAQYYPTESTRNSPIMDIQDQRFYRYGQDCVQTLETQAWNYSDCAFSSNDVTECKQYFDVQHQQNMNAFNGLL

Uniprot

H9J9I9   A0A2A4K9L0   A0A194R3Y1   A0A194PS16   A0A2H1WSW6   A0A212F7E4   + More
A0A0L7L944   D6WJ63   A0A2D1QUG7   A0A3L8DQU8   A0A026WEB8   E2B8V8   A0A154PM89   A0A0J7NSW5   A0A195BC32   A0A158N9J7   F4WLZ5   A0A195FUH7   E2AF04   A0A195DCL5   A0A151XA52   N6TR56   A0A0N0U513   A0A195C6T8   A0A0L7QVW0   A0A088A1D3   A0A310SSH3   E0VTR9   K7J7U6   A0A3Q0INA0   A0A067RLT7   A0A2A3EIT5   A0A2J7Q7R7   E9J372   A0A2J7Q7S6   U4U749   A0A182GM92   A0A1S4EWD9   A0A084VI51   A0A182G640   A0A182IZI5   A0A182W7P5   A0A1S4EWD4   B0WHD1   A0A182K000   Q17NS1   A0A182JSD2   A0A182W7P4   A0A084VI53   A0A182IEF2   A0A182L2L9   A0A182X1H2   A0A1S4GWY9  

Pubmed

19121390    26354079    22118469    26227816    18362917    19820115    + More
30249741    24508170    20798317    21347285    21719571    23537049    20566863    20075255    24845553    21282665    26483478    17510324    24438588    20966253    12364791   

EMBL

BABH01004903    NWSH01000026    PCG80594.1    KQ460855    KPJ11950.1    KQ459601    + More
KPI93930.1    ODYU01010805    SOQ56138.1    AGBW02009889    OWR49638.1    JTDY01002266    KOB71771.1    KQ971343    EFA04430.1    KY285065    ATP16168.1    QOIP01000005    RLU22777.1    KK107293    EZA53374.1    GL446390    EFN87857.1    KQ434978    KZC12972.1    LBMM01001930    KMQ95515.1    KQ976519    KYM82108.1    ADTU01001393    ADTU01001394    GL888217    EGI64639.1    KQ981264    KYN43947.1    GL438984    EFN67959.1    KQ980989    KYN10650.1    KQ982353    KYQ57158.1    APGK01023663    APGK01023664    KB740510    ENN80523.1    KQ435803    KOX73171.1    KQ978220    KYM96350.1    KQ414725    KOC62686.1    KQ760945    OAD58603.1    DS235771    EEB16775.1    AAZX01014005    KK852432    KDR23998.1    KZ288250    PBC31099.1    NEVH01017440    PNF24628.1    GL768058    EFZ12735.1    PNF24629.1    KB632104    ERL88862.1    JXUM01074193    KQ562816    KXJ75070.1    ATLV01013284    KE524849    KFB37645.1    JXUM01044487    JXUM01044488    JXUM01044489    KQ561403    KXJ78695.1    DS231934    EDS27637.1    CH477197    EAT48332.1    ATLV01013289    KFB37647.1    APCN01005201    AAAB01008964   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000007266    UP000279307    UP000053097    UP000008237    UP000076502    UP000036403    UP000078540    UP000005205    UP000007755    UP000078541    UP000000311    UP000078492    UP000075809    UP000019118    UP000053105    UP000078542    UP000053825    UP000005203    UP000009046    UP000002358    UP000079169    UP000027135    UP000242457    UP000235965    UP000030742    UP000069940    UP000249989    UP000030765    UP000075880    UP000075920    UP000002320    UP000075881    UP000008820    UP000075840    UP000075882    UP000076407   

PRIDE

H9J9I9   

Pfam

PF03615   GCM

Interpro

IPR003902   Tscrpt_reg_GCM        + More
IPR036115   GCM_dom_sf       
IPR039791   GCM       

SUPFAM

SSF90073   SSF90073       

ProteinModelPortal

H9J9I9   A0A2A4K9L0   A0A194R3Y1   A0A194PS16   A0A2H1WSW6   A0A212F7E4   + More
A0A0L7L944   D6WJ63   A0A2D1QUG7   A0A3L8DQU8   A0A026WEB8   E2B8V8   A0A154PM89   A0A0J7NSW5   A0A195BC32   A0A158N9J7   F4WLZ5   A0A195FUH7   E2AF04   A0A195DCL5   A0A151XA52   N6TR56   A0A0N0U513   A0A195C6T8   A0A0L7QVW0   A0A088A1D3   A0A310SSH3   E0VTR9   K7J7U6   A0A3Q0INA0   A0A067RLT7   A0A2A3EIT5   A0A2J7Q7R7   E9J372   A0A2J7Q7S6   U4U749   A0A182GM92   A0A1S4EWD9   A0A084VI51   A0A182G640   A0A182IZI5   A0A182W7P5   A0A1S4EWD4   B0WHD1   A0A182K000   Q17NS1   A0A182JSD2   A0A182W7P4   A0A084VI53   A0A182IEF2   A0A182L2L9   A0A182X1H2   A0A1S4GWY9  

PDB

1ODH     E-value=9.76149e-47,     Score=472

KEGG

101742696    K21598 chorion-specific transcription factor GCM | (RefSeq) transcription factor glial cells missing

GO

GO:0003677   GO:0001228   GO:0006355   GO:0005694   GO:0003824   GO:0005524   GO:0006259   GO:0006397   GO:0004651   GO:0005634  

PANTHER

PTHR12414  

Length:

455

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00132

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00618

outside

1  -  455

 

 

Pi

200.135781

Theta

144.357631

Tajima's D

1.087429

CLR

1.852756

CSRT

0.685415729213539

Interpretation

Uncertain