SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01594
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location
Bomo_Chr3(-):14808232-14813330      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.3
 

Sequence

CDS
ATGTCGGGGGGGACATCACCCCCCATAATCAGCACACCCGGCCCGTCCTGCAAGGGACGTCAAGTGATGACGAACCTCAGATTCCGACCTTCACCGGCAACCCGTACAGTCTCGATGGGACTCGGGACGGACAGTCCGCCCGGGCCTCCGGTCGCGGCCCAGAGGACTCCGAGGATCGAACCGGAGGAAGATATCCTTCCCCCGTTGACCGATCCCTCTGGGCCCTCTCGGCCGCGGAAGAAGGCCAGGTCCGAGTCCGACCGAGGCTCATCGAGCGAGAAGGACAAGCGTCCAAGATTAGGCCCCTCGTCTAGATCGGAGGGAGAGGAGAGTGCGACCACATCCTCTGCACATTCCTCAACCGAATCGGTCACTCCTTCCTCATCTAGGTCTTCGTCCCCCTCTGGGAGTCCAATCCCAGCCCAACCAATTCCAAAGCCTAGGGCTCCCGCCAGGACAGGGACAGCCCTAAGGCAAGTAAGATCCCCTCCTCGATCTCCTTCCCCAACTCTATCCCCAATCCCGGTAGACTCAACCCGAGGTGCCCCCGCCCTAAGCGGCACGGCGGGCAACCTGGACTCCACCAGGTACATGGACCTCGAGTCTACCAGACCTCAACAGGTCCTTAAGCCCAACCCCACTCCCTCTACCTCCTATGCTGCCATGGCAGCTAGGCCAGGTATCCCTACCGCCCAGAGGACTTCCCAATCCTCACGAGCCCCTCCCCCGAGGCCGAAGGGTCGCGCCCAGGAGGAACTGCGCCGACACCCGCCAATTATGGTGGAGGCCCTTCCAAATTGGTCCCGCCACATGGCGGCCATTAGGGAGCGCCTAGGCCGTGCCCCCTCGGCGCGACCCTTCGGCACCGGTTTTAGATTTCTGCCGACGTCGGTTGAGGAGTATAGGGCGGTCCAGGCCTACCTTTCGGAGGCCTCTGCCAGGGACGGTACCATTAAATGGTACTGTTACGCCCTGGCGGAGGAGAAACCTTCGAAGGTGGCAGTCCGGGGCCTCCCTGCCGACACCGACGAGGCAGAAGTCATCAATGCCTTGAAGGAGCTGGGATTCCCGGCTCGATATGCCAGGTGCATTAGGTCCCAGAGAGGGCGTCCGGGCTGCGTGTTTCACGTAGCCCTGGACCACCTCTCGAAGGACGACCTCGCCCGCTTGTACGCAGTCAACGAACTGCTGTACCTGCCGGGGGTGACGGTCGAGGGATGGCGTCCAATCCGAGGGCCTGCTCAGTGTCATCGCTGCCAGGCCTTCGGACACGCCTCCTACAACTGTCATCGTGCGGTCCGTTGCGTAAGGTGTGCCGGGGAGCACATCGTATCGGACTGCCCGAGGCCGAGGGACGGCCCGTTATCCTGTGCCAACTGCGGGAAGGACCACGCCGCCGTCGACAGACGGTGTGCGGTCTTCCGCAAGAGGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCTGCCCCACAGGCGCCTCGAGCCGGGAGTACAGCTCTTCCGGCTTCAGTACCTGTAGCAAAAGGGAAGGGGAAGGGGAAAGGGAAAACTTCCCAGCCCCCTCCCCCTTCCCACTCCGCTCCGTCTGCGGTGGTGGTGGAGGCATTGCCATCGGCGTCTACGCTGATGGCACAGGCCAACCCGCCACGGCAGTCAAAGAAAGTCCAACCTACTCCTGCTCCCCGTGGTCGCACTTCTGCTGGTGCTCCCACAATATCCCGTCCGACTAGCGGCATTACGACCCTAAACAAAAAAAGGGAAAAAAACAGGAGGAAAAAGCTGAAACGGAAATTAAGGAAAAGAGAGGAACGGGAGAATGCAAACGGAGGCATTCCGGTGCCTACAGTGCAGAGCTCTGCACCACAACCAACTGACCCAGAGAACATGGAGGTCACAGAAAACTCCACTCCGGCCCATACGATACCAAGCCAACCATTGCCTTCGGCCCATTCGGCCGATGCAACCACTACTGCCAACATAAATAATTTGCCCCCCCTCCCCCCCCGCCCACAGCGCGAGCGGCGCAGCGGTCGGCAGGCCTCCCAGCCTGTCGGTTTTGCTGCCTGGTTGCTCACATTGTGGGAGAAATTGTCCGAGGAGCTGCGCATCATTTATTGGAACCCCGACGGGATAAAGTCCCGAAAGAACGACCTGCTTGTTCTCGCCCGGGAGTACAACCCAGAGGTTGTGCTCTTGGGCGAGACCAAGCTTCGTCCTCAGGATGCGTTCAGGATTCCTAACTACTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTCGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCGGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTTCACCCTGAGGACATAAGACGGGCCCTGAATCACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTTAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCCGTGGTCGGCCCCGACGAACCCACACACGTCCCGACCGCCGCGCGCTATCAGCCCGATGTGCTGGACGTGTGTGTGCACAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTATCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACTTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTCCGGGGCTACACGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCTGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGTTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCTCCGTTGGGAGATGATGCTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATATATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGCCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAAGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGATTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCTCAGGGAAGCGTCCTGGCTCCATTCCTCTACGCTCTCTATACCAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAGTAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTCTGAGGATGCAGAGGCTTTTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCGTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCTGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCACCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG
Protein
MSGGTSPPIISTPGPSCKGRQVMTNLRFRPSPATRTVSMGLGTDSPPGPPVAAQRTPRIEPEEDILPPLTDPSGPSRPRKKARSESDRGSSSEKDKRPRLGPSSRSEGEESATTSSAHSSTESVTPSSSRSSSPSGSPIPAQPIPKPRAPARTGTALRQVRSPPRSPSPTLSPIPVDSTRGAPALSGTAGNLDSTRYMDLESTRPQQVLKPNPTPSTSYAAMAARPGIPTAQRTSQSSRAPPPRPKGRAQEELRRHPPIMVEALPNWSRHMAAIRERLGRAPSARPFGTGFRFLPTSVEEYRAVQAYLSEASARDGTIKWYCYALAEEKPSKVAVRGLPADTDEAEVINALKELGFPARYARCIRSQRGRPGCVFHVALDHLSKDDLARLYAVNELLYLPGVTVEGWRPIRGPAQCHRCQAFGHASYNCHRAVRCVRCAGEHIVSDCPRPRDGPLSCANCGKDHAAVDRRCAVFRKRARMMGVTVPPPAPQAPRAGSTALPASVPVAKGKGKGKGKTSQPPPPSHSAPSAVVVEALPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTLNKKREKNRRKKLKRKLRKREERENANGGIPVPTVQSSAPQPTDPENMEVTENSTPAHTIPSQPLPSAHSADATTTANINNLPPLPPRPQRERRSGRQASQPVGFAAWLLTLWEKLSEELRIIYWNPDGIKSRKNDLLVLAREYNPEVVLLGETKLRPQDAFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNHDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYTWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFVPNNSAPSEAAFHQSVEESVANLLSSPVPPLGDDAFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVTAGVPQGSVLAPFLYALYTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARCARFLLRLVLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRARLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=0.000118103,     Score=114

Ontologies

KEGG
101740860    no KO assigned | (RefSeq) putative uncharacterized protein DDB_G0290521
GO
GO:0003676   GO:0008270   GO:0043666   GO:0004190   GO:0006508   GO:0006811   GO:0016020   GO:0005515   GO:0003779   GO:0016021  

Topology

Length:
1603
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00588
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1603
 
 

Population Genetic Test Statistics

Pi
198.744085
Theta
152.305756
Tajima's D
1.004611
CLR
120.001482
CSRT
0.662966851657417
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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