Gene

KWMTBOMO01372

Annotation

S08405_hypothetical_protein_2_-_silkworm_transposon_mag

Location

Bomo_Chr3(+):9215171-9219473      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.167

CDS

ATGGGTGAGGAAGCGTACGATTTATTATCGACATTAGCCAGCCCTTCGAAGCCGTCACAATTAACATATGCTAATGCTGTAGCGATGTTGGCAGCTCACCTGCAACCGAAGCCCTCAATCTTGGCGGAAAGATACAAGTTTCGACAACGTCGGCAGCTGAATGAGTCAATAGCTGACTACCTCACAGAATTAAAAAAAATATCAAAAAATTGTGAATTCGGCTCGTCGCTGGATGAAAATCTGCGTGATCAAATGGTTTGTGGATTAAAGAGCGAAATCATACGGCAAAGGTTATTTGCCGAGGAGAAATTAGAATATAAGCGTGCAGTTACGTTAGCTTTGTCATTAGAAGCTGCGGAGAGGGATGCGATTGCAGTGGAACGTACGCCAATTGAGGAGGTTAACAAAATTAACTTCAATGAATGTTCAAGATGTGGAGACAGGAGACACCAAGCAAAGGATTGCATATACAAAGACTACGTGTGCAGTTCATGTCATGAAACCGGCCATCTACGAAGAATGTGCCCCAAAAACGGGCTTAAGAACCAGGCGGAGGCAGCCGGGGGTTCAGCACGCACCGGGCGCCGGGGGAACCGGGGTGCAGGCGGCAACAGGCGATCGTGGCGCGGGCAGCGCGGTGCGGGACGAGGAGGCCGAGAGCGGGCTCCTTTGCACTTATTATACGATCAAAACAACGATGACACATACAACAACTTCAATAATGAACAGGACGGGTGTGGAGAAGAAAATGAGCCTATGTACCAAATGACATTGAGTAATTATAAACCGGTGTGTATTAAAGTTAAAGTCCAAAATTGCTTGCTCAAGATGGAGGTCGATACTGGATCGGCGTTATCTTGTATTAGCAAGAATGTTTATGATAAATATTTTTCTAAGGAGAAGTTACAGGCATGCTTATTAAATTTAAAATTTTACGATGGCTCAATCATTCGGCCTTTAGGGTTTATAAACACTATAGTGAAGTACCAAGGTGTTTCAAAAATGTTAGACTTGTATGTCATAGACAAAGGAACGACTAATCTATTGGGCCGACAATGGTTAGCTGAATTGAATATTAATATAAAAATATCAAAACCTACGAGTTTTAAAATACAACACAGTAACTTTGTAACCGAACACGCACGAGACTATAATAAATTAATTAATGAAATTGTTTCTAGACATAAATCCTTGTTCGACGGCACATTGGGTAAATATACGGGGGGCACAGCAGAGTTAATCGTGCGGCCGGATGCGGTGCCTATCTACTGCCGCGCGCGACCGCTGCCGTATGCGCTGCGCGAGCGCGTCGATGCCGAGCTCGACGCGATGCTGGCCGCCGGCGTCATCAAACCGGTGGACCACTCCGACTGGGCCACGCCACTTGTCGTAGTACGCAAAGCGGACGGCGGTCTGAGAATATGTGCGGACTATAAGGTAACCCTTAACAAAGTATTAGCAATCGACAGATTTCCGGTTCCAAAAATGGAGGACTTATTCAGTAATCTCAGCGGAAATAAATTTTTTACTAAGCTTGATTTATCTCAAGCTTATAATCAAATAGTCTTATCAGAACGTTCTAGCGAGTACACGGTTATCAATACACATAGAGGATTATTTAAATATTCCCGCCTCGTCTACGGGTTAGCTTCGAGCCCAGGCATTTTTCAAAAACTAATGGTAAATATGTTTAAAAATGTCCCAAATGTAGTAGTTTTCTATGATGACATATTGATTAGAAATCAGGACCTAGACAGTCATTTAAAGTCTATAAAAGAAGTATTAGATATATTAGAAAGGTATGGCTTAAAAATTAAAAGGAGTAAGTGCGAGTTCATGGTAACAGAAGTGAGGTATTTAGGGTTCATAATAGATCAAAATGGGGTTCGTGTAGACCCAGAGAAAGTCAAATCAATAGCAACAATGCCACACCCAAATAACGTGACAGAATTAAAATCTTTCATCGGTATGGTAAACTTCTATTCGAAGTTCATACAAGATTTGAGTGCACATTTATCACCTTTATATGCCCTTTTAAAAAAAGGTAAGCACTGGATGTGGGGAAATGAACAGAATGCTGCTTTCCTGAATGTTAAAAAGTTTTTGTGTAGTACAAAAGCACTCGCACATTTTGATATGTCTTTGGAGTCGGTGTTGACTGTGGATGCGAGCGCGCGTGGTCTGGGTGCCGTGTTGGCGCAGCGCGGGCCAGGATGTCAGGAGCGCGTCGTTGCATACGCTTCACGCGCACTCACCACTCATGAATTACACTACAGTCAGATTCATAAGGAAGCATTGGCGATTGTTTTCGCGGTGGAAAAATTCCATCAATACTTATATGGGAGAAAGTTCATACTACGGACCGACCACAAACCTCTGGTGAGCATTTTCGGGCCTAACATAGGTATCCCGAGCGCGGCAGCTAGCCGCTTGCAGCGCTGGGCTATTAAACTATCAGCATATGACTTTGAAATCGAGTACGTTAGGACAGATAAAAATGTAGCCGATGCACTTTCACGGTTAATCGAGTCTCAAAAAAATGACGTAGCTTCCGAGGAAACAGACTTACCCGAGCAAACCTACTTACACTTCTCAACAGAAGCTCTGTTAATAGATTATAATGTTCTTAAAAAACAAACTAGTAGTGATCCAATCTTAAGTCGCGTATTAAGTTATTTAAGGGACGGATGGCCCTTAGACATAGAAATTAATGAATTAAAACCATATTATAATAGGAAAAACGAACTTTATATTGAATTAGGATGTATAATGTGGGGTCATCGTGTGGTTATACCCTCTTCATGCAGAAACAAAATAATAACGGAGCTTCATGATCCGCATATGGGCATAGTGAAAACAAAATCGCTAGCACGTAGTTACGTTTGGTGGCCGGGAATCGACGAAGCGCTCGAGACGGAATGTCGCGCTTGCACCGTGTGTGCTGCCGTCGCAGACGCACCTTCTACACACGCGCCCCGCTCGTGGCCCTGGCCCTCACGCCCCTGGTCCAGGTTACACTTAGACTTCTTAGGCCCCATAGGTGGAGTCACTTACCTAGTTGTAGTGGATTCATGCTCCAAATGGATAGAGGCAATTAAAATGCAGAGGACAACGGCACAAGCGGTTATATCGGTACTGCGGGACTTGTGGTCAAAATTCGGCCTGCCAAAGCAAACGGTCAGTGACAATGGACCGCCTTTCTCGAGCTCTGATTTTCAGAAGTTTCTGATTCATAATGGCATAAAACATATTTATTCAGCTCCCTATCATCCCGCCTCTAATGGGGCCGCTGAAAATGCAGTTAAAATTTGTAAACGTGCGATTAAAAAGGCATTAAAACAGAATTTAAACGTAGATACAGCTCTGTGTAGATTTTTATTAGCCTACAGAAATACAGAACATGCAACTACCGGCGATAGTCCAGCCAATATATTACAGGGTCGAAGTCTCCGTATGAGATTAGATAATTTAAAACCAGAAAGGCAATCTCGAGTTATCGCGCAACAAGAGCGGAGCGAGCAAAACGCAGGGGGTGTGCAGCGACAACTCGAGCCGGGCACTAAGGTGTGGTATCGGGATTATCGAGGTCTGGATAAATGGGTACCTGGGACGATCCTCAAGCAATTAGGTAGTCGTGATTACTGTGTACGATCTAGTTTTGGAACCGAGAATCATAGGCACGTCGATCAGCTAAAATTAAGGGTTACAAAAAATATAGATAAAGTTGATACCTTTGCGTCGATTCGTAAAAATATAAGTCCCGAACTGATCGCGCAAAATTTAGACTTAAGAACACAATCACGTAAGTCGCTATCATTTCCCATGACAAGTGGCGAGGAACCAGTGGCGGTGGTCAACGATTCGGGGAAGAGTAGTTCACCACCAAAAAATAGCACACCGGCACAGGATGCTGTATCGCCTATTCGTGGCAGCCCTATGAGACCCGCTGTGCCGATAGACAAGGGAGCATGTAATACTGGTGGTAAGAGTATCAATGAAAATGTGACACCCAAACGTGAACGTCCTGTAAGAATACGCAAGCCACCAGTTAGATATGGATTCGAGGAAATAGATTAA

Protein

MGEEAYDLLSTLASPSKPSQLTYANAVAMLAAHLQPKPSILAERYKFRQRRQLNESIADYLTELKKISKNCEFGSSLDENLRDQMVCGLKSEIIRQRLFAEEKLEYKRAVTLALSLEAAERDAIAVERTPIEEVNKINFNECSRCGDRRHQAKDCIYKDYVCSSCHETGHLRRMCPKNGLKNQAEAAGGSARTGRRGNRGAGGNRRSWRGQRGAGRGGRERAPLHLLYDQNNDDTYNNFNNEQDGCGEENEPMYQMTLSNYKPVCIKVKVQNCLLKMEVDTGSALSCISKNVYDKYFSKEKLQACLLNLKFYDGSIIRPLGFINTIVKYQGVSKMLDLYVIDKGTTNLLGRQWLAELNINIKISKPTSFKIQHSNFVTEHARDYNKLINEIVSRHKSLFDGTLGKYTGGTAELIVRPDAVPIYCRARPLPYALRERVDAELDAMLAAGVIKPVDHSDWATPLVVVRKADGGLRICADYKVTLNKVLAIDRFPVPKMEDLFSNLSGNKFFTKLDLSQAYNQIVLSERSSEYTVINTHRGLFKYSRLVYGLASSPGIFQKLMVNMFKNVPNVVVFYDDILIRNQDLDSHLKSIKEVLDILERYGLKIKRSKCEFMVTEVRYLGFIIDQNGVRVDPEKVKSIATMPHPNNVTELKSFIGMVNFYSKFIQDLSAHLSPLYALLKKGKHWMWGNEQNAAFLNVKKFLCSTKALAHFDMSLESVLTVDASARGLGAVLAQRGPGCQERVVAYASRALTTHELHYSQIHKEALAIVFAVEKFHQYLYGRKFILRTDHKPLVSIFGPNIGIPSAAASRLQRWAIKLSAYDFEIEYVRTDKNVADALSRLIESQKNDVASEETDLPEQTYLHFSTEALLIDYNVLKKQTSSDPILSRVLSYLRDGWPLDIEINELKPYYNRKNELYIELGCIMWGHRVVIPSSCRNKIITELHDPHMGIVKTKSLARSYVWWPGIDEALETECRACTVCAAVADAPSTHAPRSWPWPSRPWSRLHLDFLGPIGGVTYLVVVDSCSKWIEAIKMQRTTAQAVISVLRDLWSKFGLPKQTVSDNGPPFSSSDFQKFLIHNGIKHIYSAPYHPASNGAAENAVKICKRAIKKALKQNLNVDTALCRFLLAYRNTEHATTGDSPANILQGRSLRMRLDNLKPERQSRVIAQQERSEQNAGGVQRQLEPGTKVWYRDYRGLDKWVPGTILKQLGSRDYCVRSSFGTENHRHVDQLKLRVTKNIDKVDTFASIRKNISPELIAQNLDLRTQSRKSLSFPMTSGEEPVAVVNDSGKSSSPPKNSTPAQDAVSPIRGSPMRPAVPIDKGACNTGGKSINENVTPKRERPVRIRKPPVRYGFEEID

Uniprot

A0A1A7YSF0   A0A1B6H651   A0A1A7WUZ7   A0A1Y1NIP2   A0A3P8VSE7   A0A131XQT5   + More
A0A1B6E6W0   A0A2S2PU23   A0A3P8QD94   A0A1Y1ML73   A0A146XMZ2   A0A146NT21   A0A3P8NHI5   A0A1B6CK52   A0A146M835   A0A3P8NV61   A0A3P8Q506   A0A1Y1KCE7   A0A147ADQ5   Q5KTM2   A0A3P8NEP7   T2MJH3   A0A131YR50   A0A267DYU7   A2TGR4   A0A3B3B4L9   A0A267EMN7   A0A1S3J391   A0A1X7VU64   A0A2R2MK13   A2TGR5   A0A1X7TH22   A0A1X7TIE8   A0A1S3SSU6   A0A1Y1LR51   A0A1Y1LWB5   A0A0N4XIH9   A0A267EVG4   A0A3P8NEQ7   A0A1Y1N2I4   A0A2H8TQH2   A0A0A9X8H3   A0A1Y1NFA4   A0A1Y1KIG3   A0A1Y1NDL8   W4LMH6   A0A0A9W0S7   A0A1S3HLN2   A0A0A9XFS1   A0A085LXT4   A0A1S3L075   A0A2I4C6V0   A0A0V1MIE6   A0A1S3KHX3   A0A2S2P240   A0A090XCC9   A0A0V1GSV8   A0A2G8LB01   A0A085NGD5   A0A267F699   A0A267GNB6   A0A267F772   A0A0V1M0R9   A0A2S2PLE8   A0A147BIP4   A0A267FRX0   K7JW34   J9L9M6   A0A1W7R696   A0A147BJE4   X1XU31   A0A0V0RTT5   G0MBW5   G0NBB0   A0A2R5LIR9   A0A147BIB8   A0A131Z1D5   A0A0V1BVI1   A0A2G5SBP3   A0A147BJE5   A0A1Y1NHT7   V5GHG2   A0A2G5T4Y2   E3MAG5   A0A2G5V287  

Pubmed

28004739    24487278    26823975    24065732    26830274    17694394    + More
29451363    26383154    25401762    24476823    24929829    25970599    29023486    29652888    20075255   

EMBL

HADX01010638    SBP32870.1    GECU01037588    JAS70118.1    HADW01008367    SBP09767.1    + More
GEZM01001427    JAV97782.1    GEFM01006397    JAP69399.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    GGMR01020219    MBY32838.1    GEZM01030100    JAV85808.1    GCES01042893    JAR43430.1    GCES01151725    JAQ34597.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    GDHC01002706    JAQ15923.1    GEZM01092768    GEZM01092767    JAV56467.1    GCES01009650    JAR76673.1    AB126055    BAD86655.1    HAAD01006009    CDG72241.1    GEDV01006828    JAP81729.1    NIVC01003024    PAA53787.1    EF199621    ABM90392.1    NIVC01001899    PAA62793.1    EF199622    ABM90393.1    GEZM01050895    JAV75318.1    GEZM01050896    JAV75317.1    UYSL01002587    VDL65922.1    NIVC01001652    PAA65446.1    GEZM01014356    JAV92133.1    GFXV01004590    MBW16395.1    GBHO01027669    GBHO01027668    JAG15935.1    JAG15936.1    GEZM01009753    JAV94337.1    GEZM01085308    JAV60010.1    GEZM01009754    JAV94336.1    AZHX01001899    ETW98900.1    GBHO01042583    JAG01021.1    GBHO01027659    JAG15945.1    KL363264    KFD49780.1    JYDO01000093    KRZ71620.1    GGMR01010825    MBY23444.1    GBIH01000761    JAC93949.1    JYDP01000327    KRZ01162.1    MRZV01000143    PIK57404.1    KL367504    KFD68531.1    NIVC01001377    PAA68677.1    NIVC01000264    PAA86792.1    NIVC01001308    PAA69606.1    JYDO01000377    KRZ65389.1    GGMR01017626    MBY30245.1    GEGO01004800    JAR90604.1    NIVC01000860    PAA75827.1    AAZX01023237    ABLF02065955    GEHC01000992    JAV46653.1    GEGO01004533    JAR90871.1    ABLF02010224    JYDL01000080    KRX17894.1    GL379789    EGT45549.1    GL379857    EGT56876.1    GGLE01005288    MBY09414.1    GEGO01004875    JAR90529.1    GEDV01003323    JAP85234.1    JYDH01000010    KRY40903.1    PDUG01000024    PIC12319.1    GEGO01004812    JAR90592.1    GEZM01002003    JAV97411.1    GALX01005032    JAB63434.1    PDUG01000006    PIC22136.1    DS268431    EFO96847.1    PDUG01000002    PIC45869.1   

Proteomes

UP000265120    UP000265100    UP000265000    UP000215902    UP000261560    UP000085678    + More
UP000007879    UP000087266    UP000038043    UP000271162    UP000019140    UP000192220    UP000054843    UP000055024    UP000230750    UP000002358    UP000007819    UP000054630    UP000008068    UP000054776    UP000230233    UP000008281   

PRIDE

Q5KTM2   

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF00077   RVP
PF03732   Retrotrans_gag

Interpro

IPR001584   Integrase_cat-core        + More
IPR001995   Peptidase_A2_cat       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
IPR034128   K02A2.6-like       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A1A7YSF0   A0A1B6H651   A0A1A7WUZ7   A0A1Y1NIP2   A0A3P8VSE7   A0A131XQT5   + More
A0A1B6E6W0   A0A2S2PU23   A0A3P8QD94   A0A1Y1ML73   A0A146XMZ2   A0A146NT21   A0A3P8NHI5   A0A1B6CK52   A0A146M835   A0A3P8NV61   A0A3P8Q506   A0A1Y1KCE7   A0A147ADQ5   Q5KTM2   A0A3P8NEP7   T2MJH3   A0A131YR50   A0A267DYU7   A2TGR4   A0A3B3B4L9   A0A267EMN7   A0A1S3J391   A0A1X7VU64   A0A2R2MK13   A2TGR5   A0A1X7TH22   A0A1X7TIE8   A0A1S3SSU6   A0A1Y1LR51   A0A1Y1LWB5   A0A0N4XIH9   A0A267EVG4   A0A3P8NEQ7   A0A1Y1N2I4   A0A2H8TQH2   A0A0A9X8H3   A0A1Y1NFA4   A0A1Y1KIG3   A0A1Y1NDL8   W4LMH6   A0A0A9W0S7   A0A1S3HLN2   A0A0A9XFS1   A0A085LXT4   A0A1S3L075   A0A2I4C6V0   A0A0V1MIE6   A0A1S3KHX3   A0A2S2P240   A0A090XCC9   A0A0V1GSV8   A0A2G8LB01   A0A085NGD5   A0A267F699   A0A267GNB6   A0A267F772   A0A0V1M0R9   A0A2S2PLE8   A0A147BIP4   A0A267FRX0   K7JW34   J9L9M6   A0A1W7R696   A0A147BJE4   X1XU31   A0A0V0RTT5   G0MBW5   G0NBB0   A0A2R5LIR9   A0A147BIB8   A0A131Z1D5   A0A0V1BVI1   A0A2G5SBP3   A0A147BJE5   A0A1Y1NHT7   V5GHG2   A0A2G5T4Y2   E3MAG5   A0A2G5V287  

PDB

4OL8     E-value=3.14764e-58,     Score=575

KEGG

NA   

GO

GO:0015074   GO:0003676   GO:0004190   GO:0008270   GO:0003964   GO:0016874   GO:0004553   GO:0003677   GO:0004518   GO:0003824   GO:0006334   GO:0003779   GO:0016021  

Length:

1358

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0133

Exp number, first 60 AAs:

0.00464

Total prob of N-in:

0.00025

outside

1  -  1358

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.900679

CSRT

0

Interpretation

Uncertain