Gene

KWMTBOMO01186  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007493

Annotation

mitochondrial_transcription_factor_A_[Bombyx_mori]

Location

Bomo_Chr3(+):4073160-4079056      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 2.469

CDS

ATGACTACTTATACTCAATTACAGCGCCTTAGTAATTATTTTTTAGGGAATTACAAGACTGTTCTATGCGGAAGAGTAAATTGGATAACGCCAATACAATCATGTGACTATACAAAAAAATCTGCAGAGCAGAGGTTGGGCCTGAACAAGCCTAAACGACCTCTTACGCCATTCTTTAAGTTCATGTCACAAATGCGACCAGCTCTTCTTGCCAAGAACCCTGGCATATCATCCAAAGAGGCTATAGCATGGACGTCGAAACATTGGCAACAACTTGATATGGAGACAAAAACCCAAATGGCGAAAGAATATCAGAAAGATTTGGAGGATTACAATAAAATTAAAGCAATGTATGAGACATCGTTAACAGAGGAACAAAAGGCAGATATAAAAAGAGTTAAAGAAGAAATGGCACAGGCCAAAGAAAAGAGAAAATTAAAAGCGGAATATAAGGAACTGGGCCGGCCTAAGAAACCAATGTCTTCATACTTTATATACATGCAGTCTAGAAAAGATAATATACAAGGAAAAACACTAAAGGAATATCAAGAGACAGTCAAGAAAGATTGGATAAACTTACCTGATAGTGAAAAAGCAAAACTGGAGAAGCAAGCACAAACATTAATGGATAAATATAAGAAAGATCTTCAAGCATGGGAACTAAAAATGGTTTCAATTGGTCGGACAGATCTAGTTAGATCGAAACCAGCCAAAGAGAAGAAAACCAAAAAAGTTGATAGTTCACAATAG

Protein

MTTYTQLQRLSNYFLGNYKTVLCGRVNWITPIQSCDYTKKSAEQRLGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKLEKQAQTLMDKYKKDLQAWELKMVSIGRTDLVRSKPAKEKKTKKVDSSQ

Uniprot

Q2F674   A0A2A4JEZ8   A0A140CTX6   A0A1E1WFK5   A0A2H1WHI4   A0A2W1BMZ7   + More
S4PDJ0   A0A194QHB3   A0A0L7KKN0   B4NFW4   A0A0Q9WUA4   A0A1W4UY31   A0A0Q9WFM2   B4M195   A0A0M4EJP4   A0A1W4VAE0   A0A1W4V9Y4   B4PPP3   Q9VDL2   B4QS21   B4IIB1   B4JXS9   B3M0C1   B4GN20   A0A0P8XZW9   A0A0R1E1A7   Q29BR2   A0A0P9ARK0   Q86BR8   A0A3B0K3Q8   B3NYX4   A0A0A1XNN0   A0A1L8ECH2   A0A1L8ECX3   A0A3B0KC55   A0A0R3NLB8   A0A0A1WHB3   B4K7R1   A0A0Q9X247   A0A067RTC2   W8AZK6   W8BYD1   A0A034VB48   A0A1I8N5Y0   A0A034VG43   A0A0K8UDH1   A0A0K8U880   A0A0K8WKX3   A0A1I8N5Z3   R4WRI6   A0A1I8PH55   C4N168   A0A1I8PGX7   A0A1J1IPZ4   A0A2J7Q5L3   A0A2J7Q5N1   A0A1B6FRB0   A0A1B6DBC7   A0A1B0DB64   D3TQN2   A0A1A9Z744   A0A0L0BUQ4   A0A1B0G2H4   A0A336M6C8   Q16FE6   A0A1S4G2W0   A0A232EH64   A0A1B0ASN8   A0A1A9WVQ1   B0W007   K7J3H3   A0A182GL54   A0A0P4VQL8   Q16IJ8   A0A2M4AYJ2   A0A023ENS6   A0A1Q3F659   A0A1Q3F5F9   A0A0V0G8I8   A0A1B6KJS9   A0A2M4AYQ6   D6WV01   W5JAX0   A0A2S2QMB2   A0A069DQW2   A0A2M3ZBB1   A0A2M3ZBF0   A0A1D2N8G9   A0A1B0CQZ6   A0A170Y569   A0A182QYD5   A0A1A9V5H5   A0A224XX71   A0A2M4BWI4   A0A1L8DHZ4   A0A166IWC7   A0A2M3ZAZ6  

Pubmed

28756777    23622113    26354079    26227816    17994087    17550304    + More
10731132    11554753    11171100    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    25830018    24845553    24495485    25348373    25315136    23691247    19576987    20353571    26108605    17510324    28648823    20075255    26483478    27129103    24945155    18362917    19820115    20920257    23761445    26334808    27289101   

EMBL

DQ311198    ABD36143.2    NWSH01001823    PCG70003.1    KU552107    AMH87783.1    + More
GDQN01005316    JAT85738.1    ODYU01008711    SOQ52529.1    KZ149958    PZC76429.1    GAIX01004932    JAA87628.1    KQ458860    KPJ04809.1    JTDY01009331    KOB63645.1    CH964251    EDW83181.1    KRF99743.1    CH940650    KRF83320.1    EDW67506.1    CP012526    ALC47196.1    CM000160    EDW96143.1    AY061457    AE014297    AB045318    AB040745    AAL29005.1    AAN14356.1    BAB20089.1    BAB62223.1    CM000364    EDX12217.1    CH480842    EDW49655.1    CH916377    EDV90491.1    CH902617    EDV43127.1    CH479186    EDW39146.1    KPU80095.1    KRK02937.1    CM000070    EAL26935.2    KPU80094.1    AAF55779.2    OUUW01000007    SPP82580.1    CH954181    EDV48377.1    GBXI01001368    JAD12924.1    GFDG01002369    JAV16430.1    GFDG01002370    JAV16429.1    SPP82581.1    KRS99669.1    GBXI01016519    JAC97772.1    CH933806    EDW16432.1    KRG02124.1    KK852428    KDR24060.1    GAMC01012287    GAMC01012285    JAB94270.1    GAMC01012286    JAB94269.1    GAKP01018416    JAC40536.1    GAKP01018414    JAC40538.1    GDHF01027602    JAI24712.1    GDHF01029531    GDHF01028329    JAI22783.1    JAI23985.1    GDHF01013098    GDHF01000610    JAI39216.1    JAI51704.1    AK417302    BAN20517.1    EZ048841    ACN69133.1    CVRI01000056    CRL01794.1    NEVH01017557    PNF23876.1    PNF23875.1    GECZ01017022    JAS52747.1    GEDC01018233    GEDC01014393    JAS19065.1    JAS22905.1    AJVK01004632    EZ423734    ADD20010.1    JRES01001300    KNC23800.1    CCAG010018314    UFQS01000618    UFQT01000618    SSX05457.1    SSX25816.1    CH478458    EAT32963.1    EAT32964.1    NNAY01004596    OXU17674.1    JXJN01002890    DS231816    EDS37579.1    JXUM01071245    KQ562651    KXJ75407.1    GDKW01002457    JAI54138.1    CH478073    EAT34084.1    GGFK01012520    MBW45841.1    GAPW01003504    JAC10094.1    GFDL01011990    JAV23055.1    GFDL01012248    JAV22797.1    GECL01001673    JAP04451.1    GEBQ01028255    GEBQ01022696    JAT11722.1    JAT17281.1    GGFK01012521    MBW45842.1    KQ971357    EFA08515.1    ADMH02001646    ETN61607.1    GGMS01009661    MBY78864.1    GBGD01002793    JAC86096.1    GGFM01005030    MBW25781.1    GGFM01005115    MBW25866.1    LJIJ01000147    ODN01559.1    AJWK01024249    GEMB01003654    JAR99564.1    AXCN02000647    GFTR01003835    JAW12591.1    GGFJ01008221    MBW57362.1    GFDF01008008    JAV06076.1    KU364383    ANA11557.1    GGFM01004932    MBW25683.1   

Proteomes

UP000218220    UP000053268    UP000037510    UP000007798    UP000192221    UP000008792    + More
UP000092553    UP000002282    UP000000803    UP000000304    UP000001292    UP000001070    UP000007801    UP000008744    UP000001819    UP000268350    UP000008711    UP000009192    UP000027135    UP000095301    UP000095300    UP000183832    UP000235965    UP000092462    UP000092445    UP000037069    UP000092444    UP000008820    UP000215335    UP000092460    UP000091820    UP000002320    UP000002358    UP000069940    UP000249989    UP000007266    UP000000673    UP000094527    UP000092461    UP000075886    UP000078200   

PRIDE

Q2F674    Q9VDL2    Q86BR8   

Pfam

PF09011   HMG_box_2        + More
PF00505   HMG_box

Interpro

IPR009071   HMG_box_dom        + More
IPR036910   HMG_box_dom_sf       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

Q2F674   A0A2A4JEZ8   A0A140CTX6   A0A1E1WFK5   A0A2H1WHI4   A0A2W1BMZ7   + More
S4PDJ0   A0A194QHB3   A0A0L7KKN0   B4NFW4   A0A0Q9WUA4   A0A1W4UY31   A0A0Q9WFM2   B4M195   A0A0M4EJP4   A0A1W4VAE0   A0A1W4V9Y4   B4PPP3   Q9VDL2   B4QS21   B4IIB1   B4JXS9   B3M0C1   B4GN20   A0A0P8XZW9   A0A0R1E1A7   Q29BR2   A0A0P9ARK0   Q86BR8   A0A3B0K3Q8   B3NYX4   A0A0A1XNN0   A0A1L8ECH2   A0A1L8ECX3   A0A3B0KC55   A0A0R3NLB8   A0A0A1WHB3   B4K7R1   A0A0Q9X247   A0A067RTC2   W8AZK6   W8BYD1   A0A034VB48   A0A1I8N5Y0   A0A034VG43   A0A0K8UDH1   A0A0K8U880   A0A0K8WKX3   A0A1I8N5Z3   R4WRI6   A0A1I8PH55   C4N168   A0A1I8PGX7   A0A1J1IPZ4   A0A2J7Q5L3   A0A2J7Q5N1   A0A1B6FRB0   A0A1B6DBC7   A0A1B0DB64   D3TQN2   A0A1A9Z744   A0A0L0BUQ4   A0A1B0G2H4   A0A336M6C8   Q16FE6   A0A1S4G2W0   A0A232EH64   A0A1B0ASN8   A0A1A9WVQ1   B0W007   K7J3H3   A0A182GL54   A0A0P4VQL8   Q16IJ8   A0A2M4AYJ2   A0A023ENS6   A0A1Q3F659   A0A1Q3F5F9   A0A0V0G8I8   A0A1B6KJS9   A0A2M4AYQ6   D6WV01   W5JAX0   A0A2S2QMB2   A0A069DQW2   A0A2M3ZBB1   A0A2M3ZBF0   A0A1D2N8G9   A0A1B0CQZ6   A0A170Y569   A0A182QYD5   A0A1A9V5H5   A0A224XX71   A0A2M4BWI4   A0A1L8DHZ4   A0A166IWC7   A0A2M3ZAZ6  

PDB

3TMM     E-value=1.5095e-16,     Score=208

KEGG

101740456    K11830 transcription factor A, mitochondrial | (RefSeq) transcription factor A, mitochondrial

GO

GO:0005634   GO:0003677   GO:0006979   GO:0005739   GO:0003700   GO:0045893  

Length:

249

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06341

Exp number, first 60 AAs:

0.06324

Total prob of N-in:

0.14995

outside

1  -  249

 

 

Pi

167.655846

Theta

160.795926

Tajima's D

0.214617

CLR

0.800768

CSRT

0.427978601069947

Interpretation

Uncertain